Zingiber officinale (ginger): 121974475
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Entry
121974475 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase listerin-like isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121974475
04121 Ubiquitin system [BR:
zof04121
]
121974475
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121974475
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121974475
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121974475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
HEAT_GCN1
zf-RING_2
zf-rbx1
FANCL_C
MyTH4
zf-ANAPC11
zf-C3HC4
zf-RING_16
ParcG
zf-C3HC4_2
RINGv
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
121974475
NCBI-ProteinID:
XP_042381487
LinkDB
All DBs
Position
4B:3975365..3999403
Genome browser
AA seq
1920 aa
AA seq
DB search
MGKPKGDGARSKSRPSSSSSAASLLPSGVSTVGFGGYLGSSRVDSSSSAEDSVAFLDVDS
EMTQHLKRLGRKDPTTKLKALTTLAVLFKEKPTEELVQIIPQWAFEYRKLLHDFNREVRR
ATHDTMTALVTAIRKGLAPHLKSLMGPWWFSQFDPVPEVSLAARLSLEAAFPMQERRLDA
LMFCVNEIFLYLDENLKLTPQTMFDKAIPADELEDMHQRAISSSLLAIATLIDILLVVKM
PNSDNGNCSPEQKLISRARAAAESSVENLLAMHKCFLQHMKSKHPSVRTATYSIIASIIK
NIPHVLNEENVKVLSIAILGVLQEKDASCHSSMWDMLLLFSKKIPNGWSYCNTQKVVLNR
FWHFLRNGCQGSQQVSYPVLVLFLDSIPTDVNLGEQFVDYFFQNLWAGRHSSCHSLADSK
ALFGAFKECFLWVLHHVSRYCKTKDDQSELPIKLINDIFVELLLNDYLLSASVKKQDESS
QARSDISTDGGSSLSHERSQQRVNSSHQAFFTEELLRCIIGILLEISQEDQNLTSVFCTS
FQKDCLEIIREGDSLQNFPECIERIVRFFLLIDKCILLKGHDWPLHFLGRPLFFTTFPVI
KSMDSLDAVKLLSILVEIFGPDQIFSEFDSPNAMDIETKTKHFFHTFNNDFIPWCLEGVG
SFGNLKLDFLLDLFQDDYFFQQWCAVITYCVDDTKFTETSDNISNIQVLAMLIGKVRERI
RSKKLGRLRKFGLSPEHWHHDLLNSSAISFAHQTSMINCHAQFLCAVLGGSAEDDQLCFL
SKETLIIVWEGILRKMTSLLTSSSFHWVHFACSLILGSDHNDFLKLQEASFSMKVAMAQF
SFEVLKGSIFCLKIIDDSCTLVSSLLATLFVLDWENCMMALTCTNDKFDCSKYAGDIDNS
LLETKVLGNEEQVDAKLALGRKFCAYRRKITPNFLKNTSRETQSRFQNILVKIVRFALLD
SDDLVSPKQSISFCEWVLDMAEIICHTRKEMQILLDQLFQEGKSWPFWVKSLIDSGNRVA
TFQRGTASLSVNEHHNHSFVAFADKLVSRLGVDVVIAGLTEISIGSSRIEVVSGFSSPYK
REWLAAEIISSWEWQVSNATEAFLPLLSKYARTETSTLEANILFSIINTLIDGAITHETH
DHWASFDSWRVLHDEFDKINDLFLRGLVSLLSTLFVKEKVWGKCEAIQLFKQLMDKLYVG
TSVVQYCLRILPFILSIIIPSALENSESDGTTEEISKDSLHENPTRKYVMSWLENSLSFP
SIISAKTEQDVEEWIQAVISCFPLRTTVETGKFEVSLLRNVSNEEATLLLSLFRKQVCLN
DASAATNQKQIILGKLIAVSVGYCWQKFDKDDWSFVLDNSHRWLESSVLLLEEITDSIDD
AIVNHTIINGLECTQKKLEISLQNYDPWIFHLSTAALVTLRLLSQPEEHEKTDSTEALHH
IKLGKWADMKDQTMASILRLFFATGASEAIANSCSGNLSNVVASSRLMQSHFWGMIASFV
WNSPKLVRSAAVESMKLWGLSKDSISSLYAILFSSRPISSLQFAAYCLLSSEPLCHLSVA
SEGSPEGEGSSFMESELSLDVESSTEETFCLRDEISFLIQRQSADLPEMDLISQERVNVF
IAWALLLSCLNSFSPSSKAREKMVQYIQDSVSSTILDCIFQHIPLKSGANNVKKKEIELA
VEASNAANAARHSITTCSLELYVQSLWPVRIDTMASLAGSIYGMMIHLLPSYVRNWFSSL
RDRSLSSAVESFTKAWCSPPLLLDELSQVKETVFADDNFSVSVNRSASEIIATYKKEETG
MDLVIHLPSSYPLRPVDVECARSLGISEVKQRKWLLSLTAFVRNQNGAIAEAIRIWKSNF
DKEFLGVEECPICYSINHTTNHSLPRLACKTCKHKFHSACLYKWFSTSHKSTCPLCQSPF
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atggggaagccgaagggtgatggtgcgaggagcaagtcgcgtccttctagcagcagctcg
gctgcttctttgctgccctcgggtgtctcgactgttggattcggcggttacttggggagt
tctcgagttgattcctcttcgtcagctgaggattctgtggcctttttggatgttgacagt
gaaatgacacaacatttgaagcggcttggaaggaaagatccaacaacaaagctaaaagct
ctgacaacattggcagttctttttaaggaaaaacctactgaagaattagtgcagattatt
ccacagtgggcatttgaatacaggaagttattgcatgattttaatagagaggtccgccga
gctacgcatgacacaatgactgctcttgttacagccattaggaaaggattggctccacat
ttgaaatctttgatggggccttggtggttttctcaatttgatccagttccagaagtttct
ctggctgctaggctgtctttagaggcagcctttccaatgcaagaacgaaggctggatgct
ttgatgttttgtgtaaatgagatttttctctatttagatgaaaatttgaaattaacacca
caaacgatgtttgataaagccatacctgctgatgagttggaagatatgcaccaaagagca
atttcatcttcattattggcaatagcaacccttattgacattttactggttgtaaaaatg
ccaaactctgataatggaaattgttcgcccgaacaaaagcttatatccagagcaagggct
gctgcagagtcttctgttgaaaatctgcttgctatgcataagtgttttcttcaacatatg
aaatccaagcatcccagtgttcgtacagctacatattctatcatagctagcattataaaa
aatatcccgcatgtcttgaatgaagaaaatgtgaaggtgctttcaattgccatacttggt
gttttacaagagaaggatgcatcttgccattcgtccatgtgggatatgttattgcttttt
tcaaaaaaaatcccaaatggttggtcatattgtaacacccagaaagttgtcctcaacaga
ttttggcatttcttaagaaacggatgtcagggatcacaacaagtttcatatccagtactt
gtgctattcttggattcaataccgactgatgtaaaccttggcgagcaatttgttgattat
tttttccaaaatctttgggctggaagacattcttcatgccactcacttgctgatagcaag
gctttatttggtgcatttaaagaatgttttctctgggtgttacatcatgtatcaagatat
tgtaaaacaaaagatgaccaaagtgaacttcctatcaagttgataaatgatatttttgta
gaactattattgaatgactatctgctgtcagctagcgtgaaaaagcaagatgaaagttca
caagcaaggtctgatatctcaactgatggtggcagttcgctgtctcatgaaaggtcacaa
cagagagttaatagtagccatcaagcgttttttactgaagagttattgaggtgtattatt
ggaattctattagagatctcccaagaggatcaaaatttgacaagtgttttctgtacatcc
tttcagaaggactgtcttgaaattattcgagaaggggattccttgcaaaattttcctgag
tgtatagaaagaattgtcagattttttctattaattgataagtgtattttgctgaaaggt
catgattggcctttgcactttttaggccgaccactgttttttaccaccttccctgtgatt
aagtctatggattctctggatgcagtcaagcttctgtccatcttggttgaaatatttggg
cccgatcaaatattctcagagtttgatagcccaaatgcaatggatattgaaaccaagacg
aagcatttttttcatacattcaataatgactttattccatggtgtttagaaggagttggt
agtttcggaaatctaaaactagattttctgctcgatttgtttcaagatgactattttttt
cagcaatggtgtgcagtcatcacctattgtgtagatgatacaaaattcaccgaaacctca
gacaacattagtaatattcaggtgcttgctatgctcattgggaaggtcagggaaagaatt
aggagcaagaagctgggaaggctgcgaaagtttggcttgtcaccagaacattggcaccac
gacttgctaaattcatctgcaataagttttgctcaccagacttccatgataaactgtcat
gctcaatttctatgtgccgtacttggagggtcagccgaagatgatcagctttgctttttg
tctaaagaaactttaattattgtctgggagggaattttgagaaaaatgacatcacttctt
acttcgtcatcatttcattgggttcattttgcatgctctttgattctaggttctgaccac
aatgattttcttaagctgcaagaagcatctttctcaatgaaggttgcaatggctcaattt
tcttttgaagttctcaagggtagcatattttgcttgaagataattgatgatagttgcacc
ttagtttcttcactcttagcaaccctatttgttcttgattgggaaaattgcatgatggct
ctgacttgtactaatgataaatttgattgttcaaaatatgctggtgatattgataattct
ctgttggaaactaaagttcttggcaatgaggagcaggttgatgccaagttggctttggga
agaaaattttgtgcctatcgccgtaagataactcctaatttcttgaaaaacacaagtcgc
gagacacaatcaagatttcaaaacattttagtgaaaatagtaaggtttgcattactagac
tcagatgatttagtttctccaaaacaatctatttcattctgtgaatgggtgttagatatg
gcagaaataatatgccacactagaaaagagatgcagattttgttggaccaattattccaa
gagggaaaatcttggcctttctgggttaaatcactcattgacagtgggaacagagttgca
accttccagcgtgggacagcttcattgagtgttaatgaacatcataatcacagttttgtt
gcttttgctgacaagcttgtttcaagacttggagtcgatgtggtaattgcaggtcttaca
gagatttctattggctcatcgcgcattgaggttgtttcaggattttcatctccttacaaa
cgtgagtggcttgctgctgaaataatttcttcatgggagtggcaagtgagtaatgcaaca
gaggctttcttacctttgcttagcaaatatgcaagaactgaaacctctactcttgaagct
aatattttgttctctattattaacacattaattgatggagctattacacatgaaactcat
gatcactgggcatcttttgattcatggagggttctgcatgatgaatttgataaaatcaat
gatctatttctccgtggcctagtttccttgctctctactttgtttgtcaaggaaaaagtc
tggggaaagtgtgaggccattcaattatttaaacagcttatggataaactttatgttggc
acttctgtagtgcagtattgccttagaattcttcctttcattttaagtattattatacca
tcagcactagaaaactcagaatctgatggcacaactgaagaaatttcgaaagattctcta
cacgaaaacccaacaaggaaatatgtcatgagttggcttgaaaactccctttcctttcct
tcaataatctcagccaaaacagaacaagacgttgaagaatggatccaggctgttatatca
tgttttccattgaggacaacagtggaaactgggaaatttgaagtaagtttattgaggaat
gtgagcaatgaggaggcaactttgcttctgagtttattcagaaagcaagtatgcttaaat
gatgcttctgcagccactaatcagaagcagattattttagggaaactaatagctgtttcc
gttgggtattgctggcaaaaatttgataaagatgactggagttttgtgttagataattca
cataggtggttggagtcgtctgttttgttgctggaagagataactgatagcattgatgat
gcaatagttaaccacacaattataaatggcttagaatgtactcaaaagaagctcgaaatc
tctcttcagaattatgatccatggatatttcatttatcaactgctgcattagttacatta
cgtcttctctcacaaccggaagaacatgaaaaaacagatagtactgaggctttgcatcac
ataaaacttggaaagtgggctgacatgaaagatcaaaccatggcaagtatcttacgcttg
ttttttgcaactggagctagtgaggctattgcaaactcatgtagtggaaatttatcgaat
gttgttgcttcaagtaggctgatgcaatcacatttttggggtatgatagcatcatttgtt
tggaattctcctaagctagtgagaagtgcagcagtggagtcaatgaaactttggggtctt
agcaaggattccataagttcattgtatgctattcttttctcctcaagaccaatctcatcg
ttacagtttgcagcttattgtcttctctcttctgagcctctatgtcatttgtcagttgca
tcagaaggtagtccggagggagaaggtagctcatttatggagtcagaactctcattggat
gtggaatcatccaccgaagaaactttctgtttgagagatgagatatcctttctcatacag
agacaaagtgctgacctcccagagatggacttgatatctcaagagagggtgaatgtattt
atagcctgggcgcttttgctttcttgtctaaattcattttctccttcatccaaggctagg
gaaaaaatggttcaatacatacaggactcagttagttcaacgatattagattgcattttc
cagcatattcctttgaagagcggagcaaataatgtaaagaaaaaggaaattgaacttgca
gtcgaagcttctaatgctgctaatgctgctagacattcaattactacatgctctctagaa
ttatatgtacaatcactctggcctgttaggattgatacaatggcctcactggctggttca
atatatggaatgatgattcatcttcttccctcttatgttcgtaattggttttctagtctg
cgcgatcgctctctgtcatctgctgttgaatcttttacaaaagcttggtgcagtcctcct
cttcttttggatgaactttcccaggtcaaagagactgtctttgctgatgacaacttctca
gtgagtgtaaataggtcagcttctgagataattgctacttataaaaaggaagagactggg
atggatcttgtgattcaccttccaagttcctatcccttgcgccctgtggatgttgaatgt
gcaagaagtttgggaattagtgaagtaaaacaacgcaaatggttgctgtctttgacagca
tttgttcgcaatcagaatggtgcaattgctgaggcaattcggatatggaaaagcaatttt
gacaaagaatttcttggtgttgaagaatgccctatctgttacagcataaaccacacaaca
aatcacagtcttcctaggctcgcttgcaaaacttgcaagcacaagtttcactctgcttgc
ctttacaagtggttctcaacttctcataaatcaacttgcccattgtgccagtcccccttc
tga
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