Zingiber officinale (ginger): 121974497
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Entry
121974497 CDS
T08725
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121974497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121974497
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121974497
mRNA degradation factors
5'-3' decay
Decapping complex
121974497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
RED_N
DeoC
Motif
Other DBs
NCBI-GeneID:
121974497
NCBI-ProteinID:
XP_042381524
LinkDB
All DBs
Position
4B:4427956..4440547
Genome browser
AA seq
1385 aa
AA seq
DB search
MASPTGSPNTSANYDTQALFKPPNPSPSPGAIPRQPFPPTSAYPSPLPPSTFPAPTHPGG
FSYPPATPPFHHHPFLHYPQESLHRTPAIYPPVSPHLPNPNPGTNPSPSSNTNPGARLMA
LLNPPASSQLESAVSMPPPSSTQLEFLTPSAIGALYPVPSAPPAALAQPAPTRMSSNKLP
RGRLLSAGSRAVYDVDSRLPGEKQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYICYGLK
LGAIRVLNINTALRSLLKGHSQRVTDMAFFAEDVHLLASASIDGRVFVWKIDEGPDEENK
PLITGKVIMAIQIVGDRESYHPRICWHSHKQEILYVGIGVLVLKFDINKVGRGKEFLAEE
PLKCSIEKLIEGVQIIGKHDEEVTDLSISQWMVTRLASSSKDGTVKIWDDRKAVPLSVLR
PHDGHPVNSVEFMTAPNHPEHINLITAGPLSREIKIWASASEEGWLLPSDSESWHCTQML
DLRSSSEPRMEEAFFNQLVVLSQASLIIIANAKKNAIYAVHIDYGPCPASTHMDHIADFT
VAMPILSLTVTHDILAEGDKIVQVYCVQTQAIQQYALDLIQCLPPPIANAGLAKDPSSHV
IEASNSEGLPVPELSSEHYRTNTAMENASPETLLTDGSMDGASAAPALVTTDSSEATGIN
ESSTSNVEVKLISPLLNVDADAIHVASSSGPFNIDITGSSPSLKSPAKTSEDALSLSGHE
TDHSNFEHAIDRGVYSVVTKESTEKDGLNTGQNDISMIFNPPMMFKLGGNSTHLITPSEI
LSGAISTSENSNVNKKLTEEVKGKDLNTGDSIINAEVVEGTTVQQETNTQKVPQDFSALE
LSPQVSIAHSEVDDEAPTVIETSFQVESHPAEDIAIVEAKKHLLTTAKEEGQDRTINATE
DIAEPGVASVSESLLVSKGKKQKEKQRQTSSPSSSSSSLLHSTYSLNEPVVTESVPSADP
ASLDILALQEMLSQVVNMQKELEKQMSLVVAAPVAKEGKRMETVLSRNIEKMIKANGDAL
WARVQEENAKYEKFEKERMQQITNLITNCVNKDLPTVLERAVKKELSTIGSTVARSIAPS
ISSAIAESFQRGVGDKAVTQLEKSVTSKLEATVARQIQSQFQTSGKQVLQDSLRSCLESS
VVPSFEQSCKAMFEHIENAFQNGMSEHTAAASQQLEAANTPLAATLREAINSASSITQNL
TTELIDGQRKILALIAAGNTKVLNPLVSQQANGPTAGLPEMVGAHLDPTKELSRLISERK
YEEAFTMALQRSDVSIVSWLCTQVDLQALCSMVPLPLSQGVLLALLQQLACDISNETSRK
VGWMTDVAVAINPADPMIALHVRPIFEQVYSMLGRQRSLPTTAAPESASIRLLMHVINSV
LTSCK
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccccaccgggagccccaacacctccgcaaactacgacacgcaggccctcttc
aagccccctaaccccagccctagtcccggcgccattccacggcagccgttccctcctact
tctgcctacccgtctccgctaccgccgtcgacgtttccggctccgacgcatcccggaggc
ttctcgtaccccccggctactccgcctttccaccaccatcctttcctccactacccccag
gaatccctccaccgtaccccagccatctacccccctgtgtctccccatcttccgaacccc
aatcccggcactaaccctagtcctagctccaacaccaatcccggtgctcgccttatggcc
ctcctgaaccctcccgcaagttcccaactcgaatctgccgtctcgatgccgcctccttct
tccactcaattggaattcctcaccccttccgctatcggcgcgctttaccctgtgccttca
gccccacctgctgcgctggcacagccagcgccaacgaggatgtcgagcaacaagttgcct
aggggtcggcttctcagcgcagggtcacgtgctgtctatgatgttgattcacgtctgccg
ggagagaagcagccgcctcaacttgaggtgacaccgatcaccaagtatacatctgaccca
gggcttgttttggggcggcaaatcgctgtcaatcgaacctacatatgctatgggcttaag
cttggtgctattcgggtgctcaatatcaacacagctctgagatcgttgctaaaggggcat
tctcagagagttacagacatggctttctttgctgaagatgtgcaccttttagccagtgca
agcattgatggaagggtttttgtgtggaagattgatgaggggcccgatgaggaaaacaag
ccactgattacaggaaaagttataatggctattcaaattgttggcgacagagagtcatat
catccccgaatttgttggcactcgcacaagcaagaaattctgtatgttgggataggggtt
ttagtgctaaaatttgatataaataaagttggaagaggaaaagaatttttggctgaggag
ccactcaaatgctccattgaaaagcttatagaaggagtgcaaattataggtaaacatgat
gaagaagtgacagatttgtccatatcccaatggatggtcactcgtttagcgtcatcctca
aaagacggcacggtaaagatctgggatgaccgtaaagcagtgcccctttcggttttaagg
ccacatgatggccatcctgtcaactcagtggagttcatgacagcacctaaccaccctgaa
cacatcaatctcatcacagctggacccttaagtcgagaaataaaaatttgggcctctgct
agcgaagagggttggctattgcctagtgactctgaatcatggcattgcactcagatgttg
gacttgagaagttcatcagaacctcgaatggaagaggcttttttcaatcaattagtagtg
ctttctcaagcaagccttattataattgctaatgctaagaagaatgctatttatgcagtg
catattgactatggtccatgtcctgcttctacacacatggaccatatagcagacttcact
gtggcaatgcctattttgagtcttactgtaacgcatgatatcctggctgaaggagataaa
attgttcaagtctactgtgtacaaacacaggcaattcaacaatatgctttggatttaatt
cagtgtttaccaccaccgattgctaatgctgggttagcaaaagatccttcatcccatgta
atcgaggcatctaattctgaaggattacctgtgccagagttgtctagtgaacactacaga
actaataccgctatggaaaatgcttcaccagaaacccttcttactgatggtagtatggat
ggtgcatctgcagctccagctcttgtaaccacagattcttccgaggccactggtattaat
gaatcatcgacatcaaatgttgaagttaaactcatttctccacttctgaatgtggatgca
gatgcaattcatgttgcctcatcttcaggtccctttaacatagacataacaggaagttca
ccttctctaaagagccctgcgaaaacttctgaggatgctctgtccttgagtggtcatgaa
actgatcactccaattttgagcatgcaattgacaggggagtatacagtgttgtaacaaaa
gaaagtacagaaaaggatggacttaatactggacagaatgatatatccatgatttttaat
cctcctatgatgtttaaacttggtggaaactcaactcacctaattactccctctgaaatt
ttatctggtgcaatatctacttctgaaaacagtaatgtcaataaaaaacttaccgaggag
gtgaaggggaaagacttaaacactggtgacagcattataaatgctgaagtggttgagggt
acgacagttcaacaagaaaccaatactcagaaggtgcctcaagatttttctgcgctggag
ctatctccccaagtttctatagctcactcggaggtagatgatgaggctcctactgtaata
gaaacttcctttcaggtagaaagtcacccagctgaggacattgctattgttgaggcaaag
aagcacctgttaactactgctaaggaagaaggacaagatagaacaataaatgcaacagaa
gatattgctgaacctggcgttgcttcagtttctgaatctctcctggtttccaaaggtaag
aaacaaaaagaaaaacaacgtcaaacatccagtccttcatcgtcttcctctagccttctc
cattccacctattccttgaatgaaccagtagtcactgagagtgtcccttcagctgatcct
gcttccctggatattcttgctttgcaggaaatgctgagccaggtagtgaatatgcaaaag
gaactggaaaagcagatgagtctagttgtggctgctcctgtagcaaaggaaggaaaacgg
atggagactgtcttgagccgaaatattgagaagatgattaaagctaatggagatgcttta
tgggcacgtgttcaagaagaaaatgcaaaatatgagaagtttgagaaggaacggatgcag
cagatcaccaatctaattaccaactgtgtgaataaggacttgccaaccgttttagagagg
gcagtgaagaaagaactttctacaatagggtccactgtagctcgttcaattgcaccttct
atttcttcagctatagcagagtcatttcagaggggggttggtgataaagcagtgactcag
ttggagaagtcagtcacttctaaacttgaagctacggttgcaagacaaatccaatcacag
tttcaaacttctgggaagcaggttcttcaggattctcttaggtcctgtttggaatcatca
gtggttccttcttttgagcaatcttgtaaagcaatgtttgagcatattgaaaatgcattc
cagaatggaatgagcgaacacactgctgctgctagtcagcaacttgaggcagcaaataca
cctttagcagctactttgagggaagcaatcaactctgcttcttcaatcacccaaaacctc
actactgagttaattgatggtcaacgcaaaattttggctctcattgcggcaggaaacaca
aaggttctaaaccctctggtttctcagcaagctaacggccctacagctggtcttcctgag
atggtcggtgcacatctggatccgacaaaagaactctcgagattaatttcagagcgaaaa
tatgaggaagctttcacaatggcacttcaaagaagtgatgtgtcaatagtgtcttggcta
tgcacacaggtggatttgcaagcactttgttccatggtgccacttcccctgagtcaaggg
gttcttctagcacttctgcagcaactggcctgtgatatcagcaatgagacatccagaaaa
gttggctggatgactgatgttgctgtagcaatcaacccggctgatccaatgatcgcatta
catgtgaggccaatctttgagcaagtctacagcatgttgggtcgccaaagatcccttcca
accactgccgcccctgagtcggccagcatccgcctattgatgcatgttataaattctgtg
cttacctcctgcaagtga
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integrated database retrieval system
