Zingiber officinale (ginger): 121974584
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Entry
121974584 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121974584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121974584
03036 Chromosome and associated proteins [BR:
zof03036
]
121974584
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121974584
Coactivators
SAGA/TFTC/STAGA complex
121974584
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121974584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
DUF2259
CBM13-like
Motif
Other DBs
NCBI-GeneID:
121974584
NCBI-ProteinID:
XP_042381644
LinkDB
All DBs
Position
4B:6244765..6268646
Genome browser
AA seq
949 aa
AA seq
DB search
MGPTIMKLLDEDEDESMHSGADVEALLAALNCDIGDDPAVVAPPLDPDATVSSSGVLMQS
SSSESEQVIRQWKTPSEVGDDQIGQNEQNQPLQSSEQHSSGGELVQRSSIQPRVEQLNHL
SKQDQMTFQQEITHSNNCQQQSEANSVKPVDKGPEQSNIPVLDTIADTMLDVAHLSEKQQ
QQHIVQQSNSQQTPNIANAAAQPSERQQHIMQQSNSRQTLTSSQSNMALRTTKTASSIPF
HMLIQILEPHLDNDRSMQLHSIFNKLRNNEVSKEDFLRVIRNIVSDQTLRQAAQKAQMQQ
LQAQASQNTPSNTNLFSLPAQASSQQVSRGGTQQIYGAQSFPALHSLPSQNVIVPASSPG
QPHVPALHPSTGPREVGIGSNGKGPHLVQNYSNSMNMSSSERDGLMGSTQSINWQQKLQS
SISVSGSTDSYNTHAYPRPSMNSSTSFRANLESHPRPVSHTQGLVSTLIRPTQPMNTMRM
SAYQQSSNSEAKRPQTDSLANHSTSLPNQIAWQMSAKSSGLQSTSYVNHEVVDQSSEPSK
VQFSSSETTSFGTSHFNQGNSAFGSSMVRTNQVSGSVPSQADQNTQQVTSASVPPTGSTT
KSPLKKPSAGQKKPLDALGSSPPMSSKKQKTAGTSLDQSIEQLNDVTVVSGVNLREEEEQ
LLSGPKEDSRASEATRRVVQEEEDRLILQKAPLQKKISDIMLKCGLKIIGGDVERCLSMC
VEEHLKGLISYLIRLSKQRVDIEKSRHRFVITSDVRGQIFSMNQKAKEEYETKQVEGTEK
HRKVTDLDGNTEVDAEKDKEDGRSEAVKANKEEDDKLRTTAANVAARAAVGGDDMLSKWQ
LMAERARQKREGFDGAPASQLGKSSSSKSSLNLGIGSREIHESEKKDSSMPTSGGVRRLG
RNGALAHPKIARKISVKDVIAALEKEPQMSKSSLIYRLYEKSSGDSPAA
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggtcctacgatcatgaagcttcttgacgaggatgaggatgagagcatgcactccggt
gctgatgttgaggccttgttggcagcattgaactgtgatattggcgatgatccggctgtg
gttgctccacccttggatcctgatgcaactgtgtcttcatcaggtgtgttgatgcaatca
agtagttcagaatctgaacaagtaattagacagtggaaaacacccagtgaagtaggagat
gaccagattggacaaaacgaacaaaaccaacctttacaatcatcggagcagcattcgtct
gggggagaattggttcagagaagttctattcaacctcgagtggagcagctcaatcatctg
tcgaaacaagatcagatgacttttcagcaagagatcacgcattcaaataactgtcagcaa
cagtcagaagctaattcggttaaacctgtggacaagggacctgagcaaagtaatatacca
gtcttggatacaattgcagacacaatgttggatgttgcccatctttctgagaagcagcag
cagcagcacattgtccagcagtcaaacagtcaacaaacccctaacatagcaaatgcagct
gctcagccttctgagaggcaacaacacataatgcagcagtcaaatagccgacaaacactc
acttctagtcaatcaaacatggcattaagaactactaaaactgcttcgtccatacctttc
cacatgctgattcaaattttagaacctcaccttgacaatgacagatccatgcagttgcat
tcgatttttaacaaactcaggaataatgaagtcagcaaagaggactttttgagagtgata
aggaatatagttagtgatcagacgcttagacaggctgctcaaaaggcacaaatgcagcag
cttcaggcgcaggcttctcagaacacaccgtcaaatacaaatctattttcattaccagct
caagcttcttctcagcaagtttctcgtggtggtacacagcagatatatggagctcaatca
tttccagcactccactccttaccatctcagaatgttatagtccctgcatcttctcccggt
caacctcatgttcctgctttgcaccctagcacaggtcctcgagaagttgggattggatca
aatgggaagggcccccatcttgtgcaaaattattctaacagtatgaatatgtccagttct
gaaagggatggattgatgggttcaacacaatcaattaactggcaacagaagttgcaatca
tctatttcagtgtccggtagcactgatagttataatacccatgcctatcctaggccatct
atgaactcctcaacttctttcagagccaatctagagtcacatccaagaccagtttcacat
actcagggacttgtttcaacgctaataagaccaactcagcccatgaatacaatgagaatg
tctgcatatcaacaaagttctaatagtgaagccaagagaccgcaaactgattccttggca
aaccattcaacctccctacctaaccaaattgcttggcagatgtcagcaaaaagtagtgga
ttacagtcaacttcttatgtcaatcatgaggtggttgatcaatcatctgaaccttctaag
gttcagttttcatcttcagagaccacttcatttggtacatcacattttaaccaagggaat
tcagcatttggttcaagtatggtgagaacaaatcaggtttcaggctcagtacctagccaa
gcagatcagaatacacagcaggtgacttctgcaagtgtacccccgactggatcaacgaca
aaatctccattaaagaaaccatctgctgggcagaagaaacctttggatgcactaggctca
tctccgccgatgtccagcaagaagcagaaaactgctggcacttctcttgatcaaagcatt
gagcagctaaatgatgtcactgttgttagtggagttaatttaagggaagaggaggagcag
ctgttatcgggcccaaaagaagacagccgagcttcagaagcaactcgaagggttgtacaa
gaagaagaagacaggttaatattgcagaaggccccccttcaaaaaaagatatcagatatc
atgttgaaatgtggtttgaagattattggtggtgacgtagagcgttgtctatcaatgtgc
gtcgaggagcatttgaaggggttgatatcttatctgataagactgtcaaaacagagagtc
gatattgaaaagtctaggcatcgatttgtcatcacatcagatgttcgaggccagattttt
tcaatgaatcagaaagctaaggaagagtacgaaacaaagcaggttgaagggactgaaaaa
cataggaaagtaactgatctggacggaaacacagaagttgatgcagaaaaggacaaagag
gatggtcgttctgaagccgttaaggctaacaaagaagaagatgataaactaagaacaaca
gctgctaatgtggcagctcgagccgctgttggcggagatgatatgctttcaaagtggcaa
ctcatggctgagcgagctcgtcaaaaacgtgaaggttttgatggggcgcctgcttcccag
ctaggtaaaagttcaagcagtaaatcttcactgaacttgggaataggttcgagagaaata
cacgaatctgaaaagaaagactcttccatgccaacatctggtggtgtgaggagacttggg
aggaatggcgccctggcacatccaaaaattgcacgcaaaatctctgttaaagatgtgatt
gcagcccttgagaaggaaccacagatgtccaaatcatctttgatttatcgcctgtatgag
aaatcatccggcgattctccagcagcttag
DBGET
integrated database retrieval system
