Zingiber officinale (ginger): 121975245
Help
Entry
121975245 CDS
T08725
Name
(RefSeq) 25S rRNA (cytosine-C(5))-methyltransferase NSUN5-like isoform X1
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121975245
Enzymes [BR:
zof01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
121975245
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Other ribosome biogenesis factors
121975245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
NSUN5_N
NSUN5_fdxn-like
FtsJ
Ubie_methyltran
Methyltransf_25
PCMT
Methyltransf_31
RsmF-B_ferredox
RrnaAD
RASSF8-10_RA
ASPP2-like_RA
Motif
Other DBs
NCBI-GeneID:
121975245
NCBI-ProteinID:
XP_042382722
LinkDB
All DBs
Position
4B:complement(80025969..80044789)
Genome browser
AA seq
498 aa
AA seq
DB search
MAHPTSSKKGNVARNHRISSRNGAERSAYFARREAAGVLRRVIQDDAARRATASIKSLVY
SPSVRNKKATFALVCQTLKCLPVIKDVLVATQILNNKWKKQAELVYVTLYDILFGQEIAM
TGAVEKFLTLHKNKLEYALAKICAKRKVKKIEDLLQNNCVPVACKPRYIRINTLKVDAEV
VMQELGKTNIMVSRDDIIPEVLSLASGIDLHDHPLVCNGSIFLQGKASSMVAVALNPIPG
WKVLDACAAPGNKTAHLAALMKGQGKIIACELNEDRLKTLEETIRRSGASNVDVMHGDFL
DINTTAPLFKEVHAILLDPSCSGSGISAERLDHLLPSYEKGEDADACKSDRVKKLAAFQT
KALLHALSFPAVERVVYSTCSVYQTENEDVIKSVLPFAKSLNFELVSPFPQWPHRGLPVF
DGAEHLLRTNPKEDTEGFFIALFVRKSEKINRGNRSSSAKKLKRHNRYMPYPFCKLSAFW
FHKRLMRQGSKKNEALKW
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcctacttcctcgaagaaaggaaatgtagccagaaatcaccgtattagcagc
agaaacggggccgagcggtcggcgtacttcgccaggagggaggcggcgggggtattgcgg
cgggtgatccaggacgacgccgcccgccgcgccactgcttccatcaaatccctcgtttac
tctccctctgtacgcaataagaaagctaccttcgcccttgtctgccaaaccctcaagtgt
ctaccagttattaaagatgttttagttgcaactcaaattctaaataacaagtggaagaag
caagcagaactggtatatgtgactctctatgatattctgtttggccaggaaatagcaatg
actggtgcagttgagaaatttcttacccttcacaaaaataagctagaatatgctttggca
aagatttgtgcaaaacggaaagtcaagaagattgaagatttactccaaaataattgtgtt
cctgttgcttgtaaaccaaggtatatacggataaacacactcaaagtggatgcagaagtt
gtgatgcaagagttaggaaaaacaaatataatggtttcaagggatgacattattccagaa
gttctatcacttgcatccggtattgatttgcatgatcatcctttagtttgtaatggaagc
atctttttacagggaaaagcaagctcgatggtggcagttgctttaaatcctataccaggc
tggaaggttcttgatgcttgtgcggctcctggaaacaaaaccgcccatcttgcagcactt
atgaaagggcagggtaaaatcatagcatgtgagttgaatgaggacagacttaaaacttta
gaagagacaattagacgatccggagcttctaatgtggatgtcatgcatggtgattttttg
gacataaatacgacagctcctctcttcaaagaggtccatgccattctattagacccatca
tgttctggatctggaatttcagcagaaagattagatcatcttcttccatcttatgaaaaa
ggcgaggatgctgatgcttgcaagagtgacagagtaaagaagcttgctgcttttcaaaca
aaagctcttttgcatgcactctcatttcctgcagtcgaaagagttgtgtacagcacatgc
tcagtttaccaaacagagaatgaagatgtgattaaatcagtcctcccttttgcaaagtcg
ctcaactttgaattggtgtctcctttcccacagtggcctcatcgtggtctacccgtcttt
gatggtgccgagcacttgttaaggaccaatccaaaagaagacacagaaggattctttatt
gcattatttgtcaggaaatctgagaaaataaacagagggaacaggtcatcttcggccaag
aagcttaagagacataatagatacatgccttatcccttttgtaaactatcagcattttgg
ttccataaacgattgatgaggcaaggatctaagaaaaatgaagcactgaaatggtag
DBGET
integrated database retrieval system
