Zingiber officinale (ginger): 121975404
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Entry
121975404 CDS
T08725
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121975404
09124 Replication and repair
03420 Nucleotide excision repair
121975404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121975404
03400 DNA repair and recombination proteins [BR:
zof03400
]
121975404
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121975404
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121975404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
PINIT
Motif
Other DBs
NCBI-GeneID:
121975404
NCBI-ProteinID:
XP_042382964
LinkDB
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Position
4B:complement(86624627..86637912)
Genome browser
AA seq
452 aa
AA seq
DB search
MPQVRIVAKTFMDMVAALPAVKLEKLYDSAFICEAVLRSLPPMAKRYILQMLYIDTAVTA
KSVEEWLLPDGFSKHKVAIDRLLQLRVFLEVNDRKKETSYKINPKFQTNIQKHLVNGGTL
PREPMPLSTTVRLPTLEDLDTYASEQWERFLLQLINSSQAAKLTSFSSSMIKVFQRGLLS
SKENEVPKLTENGFQFLLMDTNAQLWYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQ
AYNLNTLTDVQRTAIKDLGELGLVKLQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVV
VETNFRMYSYSTSKLYSEILRLFSRIEYQLPNLIVGAITRESLYNAFENGITAEQIISFL
QQNAHPRVANKIPTVPENVTDQIRLWENDRNRIEMTPSYLYEDFPSKEVFEAACDFAREA
GGVLFEDSKNMRVIVHVEVHQDMRDFLRRAPK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtgcggatcgtcgccaagaccttcatggacatggtggcggctttgccggct
gtgaagctggagaagctctacgacagtgctttcatctgcgaagccgttctcagatcactg
ccccctatggctaagcggtacattttgcaaatgctgtacattgatactgcagtaacagca
aagtcagtcgaagaatggttgcttcctgatgggttttccaaacacaaagtggccattgat
aggttgcttcaactgagggtattccttgaagttaatgacagaaagaaggagacaagctat
aagataaacccaaagttccagaccaatattcagaagcaccttgtgaatggtgggacttta
cctagagaaccaatgccattgagtacgaccgtaagattaccaaccttagaggatcttgac
acatatgcctcagagcaatgggagcgcttcttgttgcagctaataaattcttctcaagca
gcaaagttgacaagtttcagttcttccatgataaaggttttccagcgagggcttctaagc
tccaaggaaaatgaagtccccaagttaactgaaaatggcttccaatttctgctgatggat
acgaatgcacaattatggtacatcattagagaatacatatctactgcagaggatcgtgga
gttgatcccacagacttgatatcattacttcttgagcttagctttcattctcttggacag
gcatacaacttgaatactctaactgatgttcaaagaactgctatcaaagatcttggagaa
ttggggctggtcaaacttcaacatggacgaaaagagggttggtttatacctacaaaattg
gctactaatctttcagtgagcttcactgattcagcttcaaacaaagagggctttgttgtg
gtggagacaaacttcagaatgtattcgtactcaacgtctaaattatattctgagattcta
cgtctgttttcaaggattgaatatcaacttcccaacctaattgttggagctattacaaga
gagagtttgtacaatgcttttgagaatggaatcacagcagaacagattatttctttccta
cagcagaatgcacatccccgagttgcaaataagatacccacagttccagaaaatgttaca
gatcagattaggctctgggaaaacgatagaaatagaatcgagatgacgccgtcctacctc
tacgaggatttcccttcaaaggaagtattcgaagcagcatgtgattttgcacgagaagcc
ggtggagtgttgtttgaagattcgaaaaacatgcgtgtcatcgtccacgtagaggtgcac
caagatatgagagattttctacgccgtgcgccaaagtaa
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