Zingiber officinale (ginger): 121975417
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Entry
121975417 CDS
T08725
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121975417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121975417
03110 Chaperones and folding catalysts [BR:
zof03110
]
121975417
03029 Mitochondrial biogenesis [BR:
zof03029
]
121975417
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121975417
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
121975417
Messenger RNA biogenesis [BR:
zof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
121975417
Chaperones and folding catalysts [BR:
zof03110
]
Heat shock proteins
HSP60 / Chaperonin
121975417
Mitochondrial biogenesis [BR:
zof03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
121975417
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121975417
Exosomal proteins of other body fluids (saliva and urine)
121975417
Exosomal proteins of breast cancer cells
121975417
Exosomal proteins of colorectal cancer cells
121975417
Exosomal proteins of bladder cancer cells
121975417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
121975417
NCBI-ProteinID:
XP_042382982
LinkDB
All DBs
Position
4B:complement(87479167..87487576)
Genome browser
AA seq
609 aa
AA seq
DB search
MASTFYAMSTFGAVASPGNFGTDKKLASRQKLSSLASVTPGLLISDRRHSFSSLRSRNSK
INAMAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV
AKEVELEDPVENIGVKLVRQAAAKTNDLAGDGTTTSVVLAQGMIAEGVKVVAAGANPVQI
TRGIEKTAKALVAELKKMSKEVEDSELADVASVSAGNNYEIGNMVAEAMNKVGRKGVVTL
EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMTAEYENCKLLLVDKKITNARDLISVL
EDAIRGGYPVVIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDMAILTG
ATVIRDEVGLSLDKADKDVLGTVAKIVLTKDSTTIVGDGSTQEEVNKRVAQIRNLIEVAE
QEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
ALLRLSSNVDAIKETLENDEQKVGADIVKKALSYPLKLIAKNAGVNGSVVTEKVLSNDNF
KFGYNAATGNYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVDIKEPEPVPAGN
PMDNSGYGY
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcttccactttctatgcaatgtctacttttggcgctgttgcttctccaggaaacttt
ggaacggacaagaagttagcttctagacagaagctttcttctcttgcttctgtaacacct
ggtctacttatcagcgacaggaggcacagcttcagttctctgagaagtcgcaactctaag
attaatgctatggccaaggagttatacttcaataaagatggatcagcaattaaaaagcta
cagaccggtgtaaacaagctagcagatcttgttggcgttactcttgggccaaagggcaga
aatgttgtcttggaaagcaagtatggatcacctaagattgtcaatgatggtgttacagta
gcaaaagaggttgagctagaggatcctgttgagaacatcggtgtcaaactagtcagacaa
gcggctgccaagactaatgatttggccggggatgggacaactacatctgttgttcttgct
caaggaatgattgctgaaggtgttaaggtagttgcagctggtgctaatcctgttcaaatt
acccgtggtattgaaaaaactgccaaagctctagttgctgaacttaagaagatgtctaaa
gaggttgaagacagtgaactcgcagatgttgcctctgttagtgctggtaacaattatgaa
ataggaaatatggtagccgaggcaatgaacaaggttgggaggaagggtgtagttactctt
gaagaagggaaaagtgctgaaaacaatctgtatgttgttgagggaatgcaatttgatcga
ggatatatttccccatacttcgtgacagacagtgaaaagatgactgctgagtatgagaat
tgcaagttgcttcttgttgacaagaagatcacaaatgcaagagatcttatcagtgtgttg
gaagatgctataagagggggatatccagtagtcataattgcagaagatattgaacaagaa
gctctagcaacacttgttgtgaataaattaagaggggcattgaaaattgccgcactaaaa
gctcctggatttggggagcgcaaaagtcagtatcttgatgacatggcaatattgacagga
gctactgtgatcagagatgaggttggtctctccctggataaagctgacaaagacgtcttg
ggtactgttgccaagattgtacttactaaagattcaaccaccatagttggtgatgggagt
acgcaggaggaagtcaataaaagagtagcacagatcagaaacctgattgaggttgcggag
caagaatatgagaaggaaaagctcaacgagagaatagcaaaactatctggtggtgttgct
gtcattcaggtcggagcacagactgaaacagaactaaaagagaagaaattgagagttgaa
gatgctcttaatgctacaaaggcggctgtggaggagggtattgttgttggtggtgggtgt
gccttgttgaggctttcatccaatgttgatgccatcaaggaaactcttgaaaatgacgag
caaaaggttggagcagatatagttaagaaggctttgagttaccctctgaagttgattgct
aaaaatgccggtgtcaatggaagtgtagtcactgaaaaggtattgtcaaatgataatttc
aaatttggttacaatgctgctactggtaactacgaggacttgatggcagccgggataatc
gatcccaccaaggtggtgagatgttgcttggagcatgcagcttctgtagccaaaactttc
ctcacttccgatgtagtggtcgtcgacatcaaggagcctgagcctgtccctgcaggaaac
ccaatggataactcaggttatggctactaa
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