Zingiber officinale (ginger): 121975571
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Entry
121975571 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121975571
03041 Spliceosome [BR:
zof03041
]
121975571
03036 Chromosome and associated proteins [BR:
zof03036
]
121975571
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121975571
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121975571
mRNA cycle factors
Common to processing body (P body) and stress granule
121975571
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121975571
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121975571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121975571
NCBI-ProteinID:
XP_042383232
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Position
4B:94682786..94687826
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AA seq
623 aa
AA seq
DB search
MRTSWADAVADADNSAAVTSASVANVVTASAAPSRGGRPAYVPPHLRNRPVTTESCAAPA
APAAPSPVGGTSKLSASAAPATGGSRRGGGSVRDVVRAGSSGARTGWHSRGGGGNRKERE
ANPFLNDDETIEVAFDSKENSGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDTLNENI
RRCRYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISAIMRGPPGPRQRGSR
TALPLALILSPTRELSVQIHEEARKFSFQTGVRAVVAYGGAPINQQLRDLERGVDILVAT
PGRLVDLMERARVSLQHIRYLALDEADRMLDMGFEPQIRRIVEQMDMPPRGQRQTMLFSA
TFPKEIQRLASDFLYKYIFLAVGRVGSSTDLIVQRVEFVTESDKRSHLMDLIHAQRDSGA
HGKQSLTLVFVETKRGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKTGATPILVA
TDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDSNASLARSLS
ELMQESNQEVPQWLTRYAAARSHSGGGGGRNRRSGGARFGGRDFRRDSSYTKGGGGDYYG
GSFGASAGYGGGYGSAGVASAWD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacgtcatgggctgatgcagttgcggacgccgataactcggctgccgtgaccagc
gcctccgttgccaacgttgtcaccgcctccgctgccccttcccgtggtggccgccctgcc
tacgtgcctcctcatcttcgcaaccgtccagtgactactgagtcctgtgcagcgccagca
gcgccggcagctccatctccagtaggaggtacgtcaaagctatcggcatctgctgctcct
gctactggtgggagccgccggggtggtggttctgtccgtgacgtggttcgtgctggatct
agtggtgcgagaactggctggcactccagaggcggtggtgggaataggaaggaacgtgag
gcgaacccttttttgaatgatgatgagaccattgaggttgcatttgatagcaaggaaaat
tcagggatcaattttgatgcttatgaagacatccctgtcgagaccagtggtgagaatgtg
cccccacctgtgaacacatttgctgaaattgatttgggggacacactaaatgagaacatc
aggcggtgcaggtatgtgaaaccaacccccgtccagcgctatgcaatccccatttcactt
gcaggccgggacctcatggcctgtgctcagactggatcaggaaagacagcggctttctgc
tttccaatcatcagtgcaatcatgaggggacctccaggaccgaggcaaagaggatcaagg
actgcccttcctctagctttgattttgtcaccaacccgtgagctatctgttcaaatacat
gaggaggccagaaagttctctttccagactggtgttcgagcagtagttgcctatggcgga
gctcctataaatcagcagttgcgagacttagaaaggggtgttgacatacttgtggcaact
cctggtcgtttggtggatttgatggagagggctagagtttctttgcaacatattagatat
ttggccttagatgaggctgacagaatgcttgatatgggctttgagccacaaattaggaga
attgtggaacagatggacatgcctccacgtggtcaaaggcaaactatgctgttcagtgcc
accttcccaaaggagatacagaggttggcttctgatttcctttataagtacatctttctt
gctgttgggagagttggttcaagcactgatttgattgttcaaagggtggaatttgtaacg
gaatctgataaaagaagccatcttatggatcttattcatgcccaaagagatagtggcgct
catggaaaacaatctctgacgttggtttttgtggagacaaaaagaggagctgattcttta
gaacactggttgtgtatgaatgggtttccagcaaccacaattcatggagataggactcag
caggaaagggaacaagctttgcgatctttcaagacgggtgctacgcccattcttgtcgcg
actgacgttgcagcacgcgggttggacataccgcacgtggcacacgttattaattttgac
ctacccaacgacatcgacgactacgtgcaccgaattggaaggacaggcagagctggaaag
tcgggccttgccactgccttcttcaacgacagtaatgcatccttagctaggtcattgtct
gagctaatgcaagaatcaaaccaggaggtgccacaatggctcactcgctacgcagctgct
cgttctcacagcggcggtgggggtggtagaaatcgaaggtctggtggagcccggttcggt
ggccgtgacttcaggagagattcctcctataccaaaggtggcggaggagattattatgga
ggatcatttggtgcatctgcaggatatggaggtggatatggaagtgcaggagtggcaagt
gcttgggactag
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