Zingiber officinale (ginger): 121975638
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Entry
121975638 CDS
T08725
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
KO
K03093
RNA polymerase sigma-I factor
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121975638
Transcription machinery [BR:
zof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
121975638
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
UPF0149
Motif
Other DBs
NCBI-GeneID:
121975638
NCBI-ProteinID:
XP_042383337
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Position
4B:97218128..97220611
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AA seq
487 aa
AA seq
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MGIVAVPSSASRSTFGSGGGFTVRRSPPLRRPFIVLSFKGEPVPKCSEAVVSPPVKEAKK
SPGKRSKRGKGAVVSAAAVAPSADACARDPGYDEVAAALENIYKLSPADALDWEANGVGN
VVRNRKKRAKRLGLEERVRLRQGKEEEESVEAKKRGRRRDLEGDAETLVREYSISTDLYS
LDWKRVKIPPVLSSAEHKWLFELMQPMKAIMQVKEDMSKDLNKEPTDGELADAVNMSILQ
LRRHLEVGQAARNKLIKHNLRLVLFVINKYYPEIATGHKFQEFCQAGVTGLITAIDRFEP
KRGFRLSTYGLFWIRHSIIRSMTLASFTKVPFGIESVRQEIQKAKLELSFELGRQPTEKE
IAERAGISLERYNDVVKASKPVFSLNGKHIVTQEEYINGITDLDREGDKHKQPALLRLAL
DDLLDSLKPKESLVMRQRYGLDGKGERTLGEIAGNLNISREMVRKHELKALLKLKHPTRV
DYLRRYI
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgggaattgtggccgttcccagctcagcctcccgatcgacgttcggcagcggcggcgga
ttcacggtccgccgctcgccgcctctacggcgacctttcatcgtcttgtccttcaaaggc
gaacccgtccctaagtgctccgaagccgtcgtctcccctcccgtcaaggaggcgaagaag
agtcccgggaaacggtccaagagagggaagggcgccgtggtctccgccgccgctgtcgct
ccttctgccgacgcttgcgccagagatccagggtacgatgaggtcgccgccgctcttgag
aacatctacaagctaagcccggctgatgccttggactgggaggcgaacggggtgggaaat
gtggttaggaacaggaagaagagggcgaaaaggttaggtcttgaagaaagagtgcgtttg
aggcaggggaaggaggaggaggagagcgtggaggcgaagaagagaggtcggaggagggat
ttggaaggggatgcggagacattagtgagggagtactccatttccaccgatttgtacagc
ttggattggaagagggtgaagataccaccagttcttagctcggctgagcacaaatggctt
ttcgagctgatgcaacccatgaaggcaataatgcaagtgaaggaggacatgtctaaggat
ctgaacaaggaaccaaccgatggtgagctggcagatgcagtgaacatgagcattctacaa
ttaagaagacatttagaggttggccaagcagcaaggaacaagctaatcaagcacaacctt
cgactggttttatttgttatcaacaagtattatccagagattgcaactggacataaattc
caagaattttgtcaagcgggtgtcacaggtctcataactgccatcgatcggtttgaaccc
aagcgcggcttccgtctgtccacatacggcctcttttggatccgacattccattatccga
tcaatgacgctcgcaagcttcacaaaagttcctttcgggattgagtcggtcagacaagaa
atccaaaaggccaaactggaactgtccttcgagctgggaagacaacctaccgagaaagag
atagccgaacgagcaggaatctcactggaaagatacaatgatgttgtcaaggcatcaaaa
ccagtgttttcgctcaatggaaagcatattgtaacacaagaagaatacatcaatggtatt
actgatctagatagggaaggcgataaacacaaacaacctgcacttctacgactagctctc
gacgatttgctagattcactgaagcctaaggaaagcttggtgatgcggcagagatatggg
ttggatggcaagggagaaaggaccttgggagagattgcagggaatcttaatatatcaaga
gagatggtcaggaagcatgaactgaaggcactccttaagttgaagcatccaactcgagtc
gactaccttcgtcgatacatttga
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