Zingiber officinale (ginger): 121975887
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Entry
121975887 CDS
T08725
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog B-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121975887
09122 Translation
03013 Nucleocytoplasmic transport
121975887
03015 mRNA surveillance pathway
121975887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121975887
03041 Spliceosome [BR:
zof03041
]
121975887
03009 Ribosome biogenesis [BR:
zof03009
]
121975887
03012 Translation factors [BR:
zof03012
]
121975887
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121975887
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121975887
mRNA cycle factors
Stress granule specific factors
121975887
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
121975887
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
Helicases
121975887
Translation factors [BR:
zof03012
]
Eukaryotic type
Initiation factors
eIF-4
121975887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
TniB
AAA
Helicase_RecD
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
121975887
NCBI-ProteinID:
XP_042383731
LinkDB
All DBs
Position
4B:105409043..105418100
Genome browser
AA seq
404 aa
AA seq
DB search
MAATSTAAPRGRNIDDENLVFETSPGVEAITSFDQMGIRDDLLRGIYAYGFEKPSAIQQR
AVIPIINGRDVIAQAQSGTGKSSMIALTVCQMVDTTVREVQALILSPTRELASQTEKVIL
AIGEYISIQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIRILILD
EADEMLSRGFKDQIYDVYRYLPPELQVALISATLPHEILEITNKFMTDPIRILVKRDELT
LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSM
HGDMPQKERDAIMAEFRSGATRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR
SGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccagcacagcggctcctaggggccgcaatatagacgacgagaacctggtt
ttcgagaccagtcctggggtggaggccatcaccagctttgaccagatgggcatccgcgac
gacctcctccgcggcatctacgcctatggattcgagaagccctctgccatccagcagagg
gctgtgattcccattatcaacggccgcgacgttattgcccaggcgcagtccggcaccggg
aagtcctccatgatcgccctaaccgtctgccagatggttgacactaccgttagagaagtt
caggcacttattttgtcacctacaagagaacttgcttcacagactgagaaggtgatcttg
gctattggtgaatatataagtatacaagcccatgcatgtattggtggaaagagtataggt
gaagatattagaaagctggagtacggtgttcatgtggtttcagggacacctggcagagtt
tgtgacatgattaaaaggaggaccttgcgcactagagctatcagaattctgatccttgat
gaagctgatgagatgctgagtagaggctttaaggatcagatttatgatgtgtacagatac
ttgcctcctgaacttcaggttgctcttatatctgcgacactacctcatgaaattcttgag
attaccaacaagttcatgactgatcccataagaatccttgtcaagcgtgatgagttgaca
ttggagggcataaaacaattttttgttgctgtggagagagaggagtggaagtttgataca
ttatgtgatctttacgacactctcactattactcaagcagttattttctgcaacacaaaa
cgaaaggtcgattggttgactgagaaaatgcgcagtaataacttcacagtatcttctatg
catggtgacatgccacaaaaagagcgagatgcaatcatggcagaatttagatcaggggca
actcgagtactgatcactactgatgtatgggctagagggattgatgtccagcaggtgtca
ttggtgataaactatgacctaccaaacaaccgagaactctacatacatcggataggccgt
tcaggacgatttggacggaagggtgttgcgattaactttgtgagaaaggatgacattcgc
attctaagagatattgagcagtattacagtacacagatcgatgaaatgccaatgaatgtt
gctgatctcatctga
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