Zingiber officinale (ginger): 121976093
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Entry
121976093 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP160-like
KO
K14303
nuclear pore complex protein Nup160
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121976093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121976093
03036 Chromosome and associated proteins [BR:
zof03036
]
121976093
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121976093
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121976093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP160_helical_2
TPR_NUP160_120_M
Beta-prop_Nup120_160
HEAT_Nup120
TPR_Nup160_C
Bcl-2_3
Motif
Other DBs
NCBI-GeneID:
121976093
NCBI-ProteinID:
XP_042384032
LinkDB
All DBs
Position
4B:complement(113288643..113320526)
Genome browser
AA seq
1265 aa
AA seq
DB search
MAICEVCERKLSFVLHADGFLRMWDLASHTKLAGYNTFSHELEGSKPTRLWVSEVDYDAN
IISLAVLHGQFLVSDIEVIVVYHFGFDAEDNVQVSSKPSIQSIRLEEGKLIDLKFCGGKL
WILKGDGSMLYDLSQYDFETEDTSVYGLQEDFVAEQLFQSSEHALDDLLWTDHSVLSSMK
DQDANFVSSIFLRRLLQPGIYHTSALRATLLEHKKYISEYEFHSLTLDGLKKEIFAIMEG
EGTANNTVATVHFWKSFCTQFLHHWCQYSAPYAVFVDASMDVVGLIRKNSISLFRSLEGI
EQLIYGFSDEFHNRRSSWTQDKDIDSELLLEMLRCMSYISHQLGGAASALYYESVVNPVT
SSEDILSQLLKIIEYGYSSSMTPLIQQIGIDATWTSQQTAHRSQRKFAVDMLISLNSLCS
RATNWAGVLDTIEKFLTYLDLHSTIKTVDSKSIYNVNSVLLIQATSQVARVMFETAFDSL
LLLRYLINISAQVNLPQVDKNRIKVKLIPAIQEVIIKWLVIHFMGTVPTTQQSLEDFGSR
LSLLNIGTKMVRPWNGKLGSADFTLACLLEFPNSLEGLEVLDSTSLPDLSKLNQLVHNFC
SSFSSSFTVVEHTTSNLIIELASLLLHHGQYVASENLFVIMDHYSRSRKHSISTQISDGE
LSACHHLLGYCLVLSQSTLQGVPKEQKLHESLCSFFRAASGAESPKYLKNLSFQTGFQYP
EECESGAIWKLHYYQWAMRLFEQYGASEGACEFALAALEQVDEVLKNSNNALPEYETVRG
QLWANVFRFSLDLKHYRDAYCAIISNPDDESRYICLRRFVIVLCENYATKVACDGGLPFV
GLLEKVEQELVWKAERSDVFAKPNIYKLLYAFEANQNNWRKAAGYMYRYSIRLKKEANLD
GSHQYSSVLQERLTALSSSINALQQVDHAYAWMESQSGNDHTNYQMSPNKRPRIVLSKIS
SDSNEASGINCAVDIEMLEKEYILTKAQHILSLVSSKFKFSGKQMLVNLVDILIEENMYD
MAFTIIVNFWKGTKLQWELERAFVAISQKCCSNRVGPTVIVSNVDTNNHLLGYSEEETYS
EGKIIASSNFHKIPGTDHWETLEQYLEKYRKLHRRLPIIVAETFLHTDPQIELPLWLVHM
FKGGGKVSWSMTGQEPDPATLFRLYVDYGRLAEATNMLLEYLDLFSSMRTTDLINRKRMT
ATWFPYTTIERLWYQLEEMRKSCHMVDDCDRLKKMLQEALMKHLQQVQIDSEDAIAAASA
SKMQS
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggctatatgtgaagtgtgtgaaagaaagctgtcatttgtgcttcatgctgatggtttc
ttgcgcatgtgggatcttgctagtcacaccaagcttgccggttacaacacattctcacat
gagcttgaaggaagtaaaccaaccaggttatgggtcagcgaagttgattatgatgcaaac
attatttctttggcagttttgcatgggcaatttttggtatcggatattgaggtgattgtt
gtttaccattttggttttgatgctgaagataatgttcaagtctcatccaaaccatctata
cagagcattcgtttagaggaggggaaactaattgacttgaagttttgtggtggtaagctc
tggatattgaaaggagatgggtcaatgctatatgatctctctcagtatgattttgaaacg
gaagatacatctgtgtatggtttgcaagaagactttgttgctgagcagctatttcagagt
tctgaacatgctttagatgatttgctatggactgatcattctgttctttcttcaatgaag
gatcaagatgctaattttgtttcatcaatttttttgcgaagattgctgcaacctggcatt
tatcatacttctgctctgcgtgccactttactagagcacaagaaatacatatctgaatat
gagttccattctcttacattggatgggttgaaaaaggagatttttgcaataatggaaggg
gagggaactgctaacaacacagttgcaacagttcatttctggaagtccttttgcacgcaa
tttttacaccactggtgtcagtacagtgcaccatatgctgtctttgttgatgcttcaatg
gatgtagttggtttgatcaggaaaaactcaatttctttattccgatctttggagggaatt
gaacagcttatatatgggttttctgatgaatttcacaatcgacgaagttcttggacacaa
gacaaagatattgattctgaactactacttgaaatgcttagatgcatgagctacataagc
catcaattaggcggagctgctagtgcattatattatgaatctgttgtcaatcccgtcacc
tcatcagaagatatactttctcagctattaaagattatagaatatggatattcttcttca
atgacacctcttatacaacaaattggaattgatgctacttggacaagtcaacaaacagct
cacagaagtcagaggaaatttgcagttgatatgttgatctctctgaattcattatgttca
agagcaaccaactgggctggggttttagataccatagagaagttcctgacctatttggac
ctgcatagtaccattaagacagttgattcaaaatccatctacaatgtcaattctgtccta
ttgatccaggctacatcacaagtcgcaagagtaatgtttgagactgcctttgattcacta
ttactgcttcgctatttgatcaacattagtgcacaggtaaatctaccacaggtggacaag
aatagaataaaggtcaaattaattccagcaattcaggaagtaattattaaatggcttgtg
atccattttatgggaactgtaccaactacacagcagtctttggaggattttggttctcgt
ctttctttactgaatataggtaccaaaatggttaggccttggaatggaaaactaggttca
gctgattttacattggcttgtctacttgagttcccaaactcacttgaaggattggaagtt
cttgattcaacctctttgcctgaccttagcaaattaaaccaattagtgcacaatttctgt
agttcattttcatcaagcttcactgttgttgaacacactacctcaaatctcataattgaa
ctagcttcacttctgctccaccatgggcaatatgtggcttctgagaacctatttgtaatt
atggatcactattcaagaagtagaaagcattctatcagtactcaaatatcagatggtgaa
ttgagtgcatgtcatcatcttctgggatattgtcttgttctttcacaaagtactctacaa
ggagtcccaaaagagcaaaagctgcatgaatctctgtgctctttcttcagagctgcatct
ggtgctgaatctccaaagtatttgaaaaacctctcttttcaaactggattccagtatcct
gaggaatgtgaatcaggagcaatctggaaacttcattactatcaatgggcaatgcgtctg
tttgagcaatatggtgcgagtgaaggagcttgtgagtttgctctagctgcacttgaacaa
gttgatgaagtcttgaaaaacagtaataatgcacttcctgaatatgagacagttcgaggg
caattatgggcaaatgtctttagattctcactagatctgaagcattatagggatgcctac
tgtgcaataatttcaaatccagatgatgagagcagatacatttgcttacgccgttttgtt
attgtactttgtgagaattatgctacaaaggttgcttgtgatggtgggctcccatttgtt
ggattgctggaaaaagtagaacaggagcttgtttggaaggctgaacgttcagatgtgttt
gcaaagccaaacatatacaaactattatatgcttttgaagctaatcaaaataattggaga
aaggctgctggctatatgtatcgttattctattagactcaagaaagaggctaacttggac
ggaagccaccaatattcttcagtgttgcaagaaaggttaactgccttgtcttcctcaatc
aatgctctgcaacaggttgatcatgcttatgcttggatggaatctcagtctgggaatgac
catacaaattatcagatgtcaccaaataaaagacctcgaattgtcttgtcaaaaatctct
agtgactccaatgaggcctcaggcataaactgtgcagtagatattgaaatgctcgagaag
gaatacattctaactaaagctcaacatattctttcacttgtcagtagtaaatttaagttt
tcaggaaaacaaatgcttgtcaaccttgtggatattttgatcgaggaaaatatgtatgac
atggcatttaccattattgtcaacttctggaagggtacaaaacttcagtgggagttggag
cgcgcttttgttgcaatctctcaaaaatgttgttcgaatagagttggacctacggtcata
gtgagcaatgtcgatactaataatcatctgttgggatattctgaggaggagacatattcc
gaaggcaaaattattgctagctcgaattttcataaaattccgggaactgaccactgggaa
acacttgagcagtatcttgaaaaatatagaaagttgcatcgaagattaccaattattgtt
gccgaaacatttctgcacactgatccgcagattgagcttcctctttggttagttcacatg
ttcaagggtggaggaaaagtttcctggagcatgaccggccaggaaccagatcctgcaaca
ttgttcagactgtatgttgactatggtcggcttgctgaagctacaaatatgttgctagag
tacttggacctattctcatccatgagaacgactgacttgattaatcggaaaagaatgaca
gcgacatggttcccatacacgaccattgagcgcttgtggtaccaattagaggagatgcga
aagtcttgccatatggttgatgactgtgatagactgaaaaaaatgttgcaagaagctttg
atgaaacacttacagcaggtacaaatagattcggaggatgctatagccgcagcatctgca
agcaaaatgcaatcatag
DBGET
integrated database retrieval system
