Zingiber officinale (ginger): 121976137
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Entry
121976137 CDS
T08725
Name
(RefSeq) DNA mismatch repair protein MSH7-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121976137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121976137
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121976137
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
121976137
NCBI-ProteinID:
XP_042384078
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Position
4B:complement(116097508..116113678)
Genome browser
AA seq
1099 aa
AA seq
DB search
MQHRQTSLFSFLQKLTPGNEGSCEPYSSPGAIRHARQPKKAPHPTPLESKNNSEETSDEI
GGTDASSQKMRRQVLSAGIPVAANDGDRRANHFSSIMSKFVKEDKSGCASNGKSNQDCCG
SFICHPSDSTEKSVKDRTPDDKCSAKHVSAIKKSFDGLGPLYSECDLDVLGPETPAVRPR
VPLFKRIQQDPSDSDKQDSSLFGPNKRFKPIGKTVTEKKILENSCESTSSKFEWLGPFKI
RDANGRRPSDPFYDKRTLYIPPDALKRMSASQRQYWSVKCQYMDVVIFFKVGKFYELYEL
DAEIGQRELDWKMTISGVGKCRQVGVSEAGIDDAVHKLTSRGYKVGRMEQLETSEQAKAR
GASSVIQRKLVNVSTPCTPSDGNMEPDAVHLLALKEGDCGSKDGSIFYGFAFLDNASLKC
WVGSISNDNSCAALGALLVQISPKEIIHERSGLSEATHVALKKYASAGSMKIQLTATTPG
VDFLDSSEVMKLASSKGYFKGSSKQWFSAIDGSVNCDLALCALGGLITHLSRLMLDDTLR
NGELFSYHVYKNCLRMDGQTLLNLEIFSNNVDGGLSGTLYKHLDHCLTASGKRLLRRWIC
HPLRDFTGINQRLDVVEAFIKNSEIMSLIASYLTRIPDLERLLGRVRSTVGSSSMLLLPF
VGDKILKQRIKTFGFLVKGLRIGLELLNMIRKEDHGMLPISLFVNISNLSSLDDLLNQFE
VALEDDFPHYQDHIVKDSDAETLAVLVELFSGKAIEWSQVINALNCIDVLQSFARASISS
FMPMSRPILLVNAYSPNLAKDKDGPMLHMKGLWHPYAVSGNGNDLVPNEIHLGNDSKICH
PCALLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEECMLSPVDTIFTRLGATDRIMSG
ESTFYVECSETASVLRNATKDSLVLLDELGRGTSTFDGYAIAYAVFRHLLEKVCCRLLFA
THYHPLTKEFGSHPHVSLQHMACSFHVGDGISSPRNDLVFLYKLAPGACSESYGLQVALM
AGLPKQVVEAAASAGQNIKQLISRNFKSSEARSEFSTLHEEWLKSLWDISKPSVSLGDED
ISDTLLCLWHELRSFYKLR
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaccgccaaacctcactcttctctttcctccaaaaactcactccggggaatgaa
ggatcctgcgaaccctattcttccccgggcgcgatccgccacgcacgtcagccaaagaaa
gccccgcacccaaccccattagagtcgaagaacaactccgaggaaacctccgatgagatc
ggaggaactgacgcttcgtctcaaaagatgcggcgtcaagtcttatcggcggggattccg
gtggctgccaatgatggcgatcgaagagctaatcatttttcgagcatcatgagcaaattc
gtgaaggaagacaaatccggatgcgccagtaatgggaaatcgaaccaagattgctgcggt
tcctttatttgtcaccccagtgattccactgagaaaagtgtgaaagatagaactcctgat
gataaatgctcagccaaacatgtttcagcgattaagaagagttttgatggattgggacct
ctgtattctgaatgtgatttagatgttctagggccagaaactcctgctgtgcgccctcgt
gttccgcttttcaagagaattcaacaggatccttctgattctgacaagcaagattcttct
ttgtttggtcctaacaaaaggtttaagccaataggcaagactgttactgaaaagaaaatc
ctggagaattcatgtgaaagtacaagtagcaaatttgagtggctcggtccttttaaaatt
agagatgccaatggaaggagaccaagtgatccattttatgacaagagaaccctgtatatt
ccacctgacgcattgaagagaatgtcagcatcacaaaggcaatattggagtgtgaaatgt
caatatatggatgttgtcattttctttaaagtgggcaagttttatgagttatatgagttg
gatgctgagattggacaaagagaacttgactggaaaatgaccattagtggcgtcggtaaa
tgcagacaggttggtgtttcagaggctggaatagatgatgctgttcataaactcacttct
aggggatacaaagttggacggatggaacaacttgagacctcagaacaagcaaaagctaga
ggagcatcttctgtcatccaaagaaaacttgtaaatgtatcaactccttgcacaccaagt
gatggcaacatggaaccagatgcagttcaccttcttgctctgaaagagggagattgtggt
tctaaggatggttctattttttatggatttgctttccttgataatgcttcattaaaatgt
tgggtgggttccatttctaatgataactcttgtgctgcacttggggcattgctagtgcaa
atttcaccaaaagaaattatccatgaaagatctggactctcagaagcaactcatgttgca
ctaaaaaaatatgcttcagcaggttcaatgaaaatacaattgactgccacaactcctggt
gtagattttctagattcaagtgaagttatgaagttggctagttctaaaggatacttcaaa
ggatcttctaagcaatggttttcagcaattgatggttctgtgaactgtgaccttgcttta
tgtgctctcggtgggcttattactcacctatcaagactaatgctagatgatactttacgt
aatggagagctcttttcttaccatgtgtataaaaattgtttgaggatggatggccagact
ctacttaatcttgagattttcagcaataatgttgatggtggcttgtcaggcactttatat
aagcatcttgatcattgcttaactgcatctggtaaacggcttttgagaaggtggatctgt
catcctttgagggattttactggtatcaatcaacggcttgacgtagtggaggcattcata
aagaattcagagataatgtccttgatagctagttatctgactagaattccagatcttgag
agattacttggacgagtcaggtctactgttggttcatcatccatgctacttttgccattt
gttggagataagatactgaagcagcggattaaaacatttggatttcttgttaaggggctt
cgaattggattagaattgttaaatatgataaggaaagaagatcatggaatgctgccaata
tcattgtttgtcaatatttcaaacctcagcagccttgatgatctgcttaaccagtttgaa
gtagctttggaggatgactttccacattatcaggatcacattgtcaaagattctgatgct
gaaactttagctgtcctagttgagctattttctgggaaggctattgaatggtctcaggtc
atcaatgcacttaattgtattgatgtgcttcagtcctttgctagagcatcaatttcgtca
tttatgcctatgagtaggcctatccttttagtgaatgcatattcaccaaatctagccaaa
gataaggatggtccgatgcttcacatgaaaggtttgtggcatccttatgctgtttcaggt
aatgggaatgatctggttcctaatgagatacaccttggaaatgactcaaaaatttgtcat
ccttgtgcattgttgctgactggaccaaatatgggtggaaagtcaacattgttgcgagca
acatgcctagcagttatattagcccagctaggttgctttgtaccttgtgaagaatgtatg
ttatcccccgttgataccatctttacacgtctcggtgcaactgatcgaatcatgtctggt
gaaagcacgttctatgttgagtgctcagaaacagcatcagttcttcggaatgctaccaaa
gattctcttgttttacttgatgagcttggtcgaggaacaagcacatttgatggttatgca
attgcctatgctgtgtttcgccatctcttggaaaaagtttgctgcaggttgctgtttgct
acccactaccatccacttactaaagaatttgggtcacaccctcatgtaagcctacagcac
atggcctgttctttccacgtgggagatggaatctcttccccgaggaatgatctggtcttt
ctctacaaacttgctcccggtgcttgctcggagagctatggcctgcaagttgctttaatg
gcaggcctccctaagcaagttgttgaagctgccgcaagtgctggccaaaacataaaacag
ctcatcagtcgaaatttcaagtcaagtgaggccaggtctgagttctccaccctgcatgag
gaatggttgaaatcactctgggatatttcaaagcctagtgtgagtttgggcgatgaagac
atatctgatactttgctttgtttgtggcacgaattgaggagcttttataaactgaggtag
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