Zingiber officinale (ginger): 121976145
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Entry
121976145 CDS
T08725
Name
(RefSeq) WD repeat-containing protein PCN-like isoform X1
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121976145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121976145
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121976145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_CAF1B_HIR1
Beta-prop_IP5PC_F
Beta-prop_IFT140_1st
Beta-prop_SCAP
PEP5_VPS11_N
Ap4A_phos_N
Motif
Other DBs
NCBI-GeneID:
121976145
NCBI-ProteinID:
XP_042384096
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Position
4B:complement(116422093..116434488)
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AA seq
803 aa
AA seq
DB search
MEKLRIHWNSSVEWKPSAVVALATSADGLRVAAAREDGSVEIWLVSPGSVGWHCQLTVQG
VPSSRVSSLVWCCSSLKSEGAGRLLSSNIDGTISEWDLYSLNQKVILDSIGVSIWQISAE
PSVDFMHPDVTDSKLVANGHTSHDAPSDCESCLNDGDDEYDELDHPTTKTDGQRLVLACD
DGCIRMYKISDKDGFIYSRSFPRVSGRILSVTWSHDAKFVFSGSSDGLIRCWDAASFHEK
YRITAGLGGLGSGPELCIWSLLFLRSGTLVSGDSTGSVQFWDGNYGTLMQAHAYHKGDVN
ALATIPSQNRVFSAGSDGQVILYKLTEEMSISEEKGICQEKLFKWIYVGYIRAHTHDVRA
LAMTVPISREDISPEEKIVKVRRQEKPVEFSYHKWAHLGVPMLISGGDDAKLIAYSAREF
TQFSPHDICPAPQRPLIKLVNDTVSDGDSMMLVQQSSGWIDVLQVKLIGKKVVTQLLARV
KSKGSSKIICSAISSSGMLFAYSDQKKPCLFELKKAEVGKSKWIINKIQLPKRLPYAHSI
IFSADSSYLMLAGHDRKIYVVDIKGLELVDTFVPQRKLDSMNLQPDEPPMTRMCTSADGQ
WLAAINCFGDIYIFNLEINRQHWFISRMNDASITAADFPPKNSNVFVVTTSSNEVFIFDL
EAKQLGEWSKQNTNHLPRRFQEFPGEIIGLSFLPSSLSVIIYSSRAMCLIDFGMPIVQEE
KVQIGLDPSSDKNERNKTNWAKRKRKSHEQKSSNTKNFDFFVFKDPALFVGHLSDNSLLL
MGKQWLDVARNFDAPIHRHIFGT
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcttcggatccactggaacagctctgtggaatggaagccttccgcggtggtg
gcactcgccaccagcgccgacggcttgcgagtggcggcggcgcgggaggatggttccgtg
gagatatggctcgtttcccctggctccgtcggatggcattgccagcttacggtccaagga
gttccttcctcgagagtttcgtcattggtctggtgctgttcgagtttgaagagcgaaggc
gctggacgtttgctatcttcgaacatagatgggacgatatcagaatgggatttgtactcg
ctaaatcaaaaggtcattttagattccatcggagtgtcaatttggcagatatcagctgaa
ccatctgttgattttatgcatccagatgtgactgattccaagcttgtagcaaatggtcac
accagtcatgatgccccaagtgattgtgaatcttgccttaatgatggtgacgatgaatat
gatgaacttgatcatccaaccacaaaaactgatggtcaacgattggttcttgcttgtgat
gatggttgtattcgtatgtataagatctctgataaagatgggtttatttacagcagaagt
ttcccccgagttagtgggcgcattttaagtgttacatggagccatgatgcaaagtttgta
ttttccggtagtagtgatgggctaataaggtgttgggatgctgcatctttccatgaaaaa
tatcgcattactgctgggcttggaggcttgggcagtggccctgaactttgcatatggtca
ttgctcttcttaaggtctggcacccttgtcagtggagatagtactgggagtgttcagttc
tgggatggtaactatgggactcttatgcaagctcatgcctaccataagggtgatgtgaat
gctttagccactattcctagtcaaaaccgagtgttttctgctggttcagatggacaggtt
attctttataagctcactgaagagatgagcatatcagaagaaaaggggatctgtcaagaa
aaactgtttaagtggatctatgttggatatataagagctcacactcatgatgtaagggcc
ttggcaatgacagtaccaattagcagagaagatatatcacctgaggaaaagatagtcaag
gtacgtcgccaagagaaacctgtcgaatttagttatcacaaatgggcacatttaggagtt
ccaatgctcatttctggaggtgatgatgccaagttgattgcctactctgctagagagttt
actcaattctcacctcatgatatatgcccagcacctcaacgaccattaataaaactcgtg
aatgatacagtttccgatggggattcaatgatgcttgttcaacaatcctctggctggata
gatgttttacaggtcaagttaattggtaagaaggtagtgacacagcttcttgctcgagtg
aaaagcaagggatccagtaaaatcatatgcagtgcaatatctagttccggaatgctcttt
gcatactctgaccagaaaaaaccctgcctttttgaactcaaaaaggcagaagtcgggaaa
agcaagtggatcatcaacaaaatacagttgcctaaaagactgccatatgcacactctatt
attttcagtgctgactcctcataccttatgctagctgggcatgataggaaaatatatgtg
gttgatataaaaggtttggagcttgtagacacatttgttccacagaggaagttggatagc
atgaatttacaaccggatgaacctcctatgactagaatgtgtacaagtgcagacgggcag
tggttggccgccatcaattgttttggtgacatctatatttttaacttggagataaacagg
caacattggttcatttctaggatgaatgatgcttccatcactgctgcggattttcctcca
aagaacagtaatgtatttgttgtcacaacgtctagcaacgaagtcttcatcttcgatcta
gaagcaaaacagttaggcgagtggtcaaaacagaacacaaaccaccttcctcgaagattt
caagaatttccaggagaaataattggtctttcctttttgccttcctctttatcagtcatc
atatatagctcaagggcgatgtgcttgattgactttggaatgccgatcgttcaagaagag
aaagtccagatcggtttagatccatcatcagacaaaaatgaacgtaacaaaactaactgg
gcaaagaggaagagaaaatctcatgaacagaagtcttccaatactaagaactttgatttt
tttgtattcaaagatcctgccttattcgttggacatttatcggataattctctcctgctg
atgggcaagcagtggctggatgttgccaggaactttgacgcgcccatacatagacacata
tttggaacataa
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