Zingiber officinale (ginger): 121976163
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Entry
121976163 CDS
T08725
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121976163
03410 Base excision repair
121976163
03420 Nucleotide excision repair
121976163
03430 Mismatch repair
121976163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
121976163
03036 Chromosome and associated proteins [BR:
zof03036
]
121976163
03400 DNA repair and recombination proteins [BR:
zof03400
]
121976163
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121976163
DNA Replication Termination Factors
ELG1-RFC complex
121976163
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121976163
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121976163
Check point factors
HRAD17(Rad24)-RFC complex
121976163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
Rad17
RuvB_N
RCF1-5-like_lid
Mg_chelatase
AAA_11
AAA_16
SLFN-g3_helicase
AAA_14
AAA_5
AAA_assoc_2
AAA_24
nSTAND3
ResIII
AAA_2
PhoH
AAA_28
AAA_30
AAA_19
AAA_7
AAA_25
NPHP3_N
RNA_helicase
DUF815
bpMoxR
TIP49
Cdc6_lid
DNA_pol3_gamma3
AAA_18
Parvo_NS1
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
121976163
NCBI-ProteinID:
XP_042384131
LinkDB
All DBs
Position
4B:117047079..117070479
Genome browser
AA seq
340 aa
AA seq
DB search
MAPLLPSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKAFAAVAVGSGSHQGYPCPPFKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDIMSS
RILHISSEEGLTLDSEAISALSLISQGDLRRAITYLQSAARLFGSSISAKDLISVSGVIP
HESVEALFRACRSGNFDVANKEVNNIIEEGYPVSQMLYQLLEVIVNGDDISDEQKARICK
KFGEADKCLIDGADEYLQLLDVASNTMRALCNMSEELRFD
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacttctcccgagctcgcagccatgggtggagaagtaccggccgaagcaggtg
aaggatgtcgcccaccaggatgaggtcgtccgagtcctcaccaacaccctggagactgct
agctgccctcacatgctcttctacggcccacccggcacagggaagaccaccactgcactc
gccatcgcccaccaactatttgggccagaactttacaaatcaagagttttagaactcaat
gctagcgatgatcgaggaattaatgttgtgcgaacaaagatcaaagcttttgctgctgtt
gctgtgggttcaggatctcatcaaggatatccatgtccacctttcaaaatcattatactt
gatgaagctgattcaatgacagaagatgcacagaatgccttgagacgtaccatggagact
tactctaaagttactaggttcttctttatatgcaattatatcagcaggattatagaacca
ctagcttctagatgtgcaaaattcaggttcaagcctctttctgaggatattatgagtagt
cgtatcttgcacattagtagtgaagaaggcttgactcttgattccgaggctatttctgca
ttgagcttaatctctcaaggggatcttcgccgtgctatcacatacctgcagagtgcagca
cgattgtttgggtcgtccatttctgccaaagacctaattagtgtttcaggggttatccct
catgaatcagttgaggcactgtttagagcatgtagatctggcaattttgatgttgctaac
aaagaggttaacaatattatagaagagggatatccagtctcccaaatgctttatcagttg
ttagaggtgatagttaatggtgatgacatatccgatgaacagaaggcaagaatctgcaag
aaatttggtgaagcagataagtgcttaattgatggagcggatgaatacttgcaacttctg
gatgtcgccagtaacacaatgcgagctctctgcaacatgtcagaggagctgcgtttcgat
taa
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