Zingiber officinale (ginger): 121976293
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Entry
121976293 CDS
T08725
Name
(RefSeq) DNA mismatch repair protein MLH3-like isoform X1
KO
K08739
DNA mismatch repair protein MLH3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121976293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121976293
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
121976293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
HATPase_c_3
DNA_mis_repair
HATPase_c
Motif
Other DBs
NCBI-GeneID:
121976293
NCBI-ProteinID:
XP_042384329
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Position
4B:120625871..120641895
Genome browser
AA seq
1266 aa
AA seq
DB search
MNPVKRLPRSVHGPLRSSVLMFDLPRVVEELVNNSLDAGAAKVSVFVNVRTCYIKVEDDG
RGISRDELVILGEKRATSKSALLDDIKVGSHGLGSEGDMMISLSDISIVEIRTKARGKPN
AYCKIIKGSRCLFLGIDDQREDVGTTVVVRDLFYNQPVRRRYMQSSTQKVIHCVKKVIVR
AALVHPQVSFKLIDIDREDELLNTVPASSPLPLVSSMFGDVSCSLREVGFSDDILMLTGY
ISRPGEVFSTKVLQYLYVNLRFVSKGPIHNLLNNLASTVMCSSALHSVDHLLQGRKKRKI
QANPAFILNLHCPFSLYGIHSEPSKTIVEFKDWEKILTFFEEAARHHWQQHLAPPQQGNS
FPQQNHRPRTCKAQDEETSIRDTTKGVSFMKKRSSCQIQQNSPQTQMTIPLGFNSEDTDV
SQDHERSKNDLNNFFRNSESCQFEIDKIKESSPLQIFKESAENLLDSTYHNITCMDIDSY
KGFSNCLLQNNVISDPVPQFVDEHDMLNSCSKYMCSKEVGNSSEAAASDATSPKFQDAKI
TYQQVEFSPPFCSLLSKSGTKSTNGYSLMKNMNYGSPYYSRHSESNCSIDWSRSDLSCED
IDLMISGYNIKHLNYRSTFPCEIVDVSIPSFPTVRKCQTIRHPYVSSSDLISPYSFGHDC
LSSSQGFDIGLGEWAISPHYEIPGLCAWPTRSTVEEFGPKNRSPSESKLMPFEGYENWPC
QKSECKDECLSLTQDSSTVLFPRERCMATKLDWNFSPSPMSKTHSFQLADDMDSENVCSF
PTVAKLDWNHSQNPLRKTYSFCPKDDMVFDNICLSGKVNDDISCFSIGTLDCNYMEDKPK
WDAVQKDSVKVGNLQDAQEFQSKRLPLNYMERSRSQSAPPFYRGKCKFSVLGCPTTVAVK
KSSSPFSKKSIGDLSHPYASQPLLQPFASEDCLQDSIEPSSEKINIYDVRYRCPDNAIND
IQEDSTSVLVKWRPGVYQTKDGGSSQKSFQQADDILDISSGLLHFTGDSLVPELIDKNCL
HDARVLLQLDNKYIPVMASGNLMVIDQHAADERIRLEELRRKVLSDEGREITYLDSEEEL
VLPEMGFQLLHKYAEKIKAWGWIFNSQSQLPELFQKNLNHFKRNQCGVTLVAVPCILGIN
LTIKDLLEYIEQLVETDGSSSLPPSVLRILNSKACRGAIMFGDSLLPSECSLIVEELKAT
SLCFQCAHGRPTMAPLLNISALHEQLEKLKFNNGGANEAWHGLRHHPRSIHHAQMLLDSS
NRFCGG
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagtaaagcgtttgccgaggagtgttcatggtcccctgagatctagcgtactt
atgtttgacttgccgagagtggtggaagaattggtgaacaatagtctagatgctggtgct
gctaaggtctctgtttttgtaaatgtgagaacatgttatatcaaagtagaagatgatggt
cgtggtatttcgagagatgaactggtcatcttgggagaaaaacgtgcaacttcaaagtct
gctctcttggatgacataaaagttggcagtcatggattaggttctgaaggagacatgatg
atctcactttcagatatttcaatagttgaaattcgaacaaaggcacgagggaagcccaat
gcatattgcaagattataaagggatcaaggtgcttatttcttggaattgatgatcagaga
gaagatgttggcacaacagttgttgttcgagatttattttacaaccaacctgttaggaga
agatacatgcaatctagcacacaaaaagtgattcattgtgtgaagaaagttattgtacga
gctgctttagtccacccacaagtttctttcaaactgattgatattgacagagaagatgag
ctacttaacacagtgcctgcctcatctcctctgcctttggtttctagtatgtttggcgat
gtatcttgttcacttcgcgaagtgggtttctctgatgatatacttatgcttactggatat
atttctcgaccgggcgaagttttctctacgaaggttctccagtatctatatgtgaacttg
aggtttgtcagcaagggtccaattcataatttgctcaataatctggcatcaacagttatg
tgttcttcagctcttcattctgttgatcatcttctgcaaggcagaaagaaacgaaaaata
caagctaatcctgcatttatacttaacctacactgccctttttctctctatggtattcat
tctgaaccatcaaagacaattgttgaattcaaggactgggaaaaaatcttaacattcttt
gaggaagctgctagacatcattggcagcaacatttggcacctcctcagcaaggcaattct
tttccccagcaaaatcacagacctagaacatgtaaagcacaagatgaagaaacttccatt
agagatactacgaagggtgttagcttcatgaagaagagaagcagttgccagatacaacag
aactctccccagacacaaatgacaatcccactaggttttaattcagaagatactgatgtt
tctcaagatcatgaaaggtcaaagaatgatctcaataatttttttaggaattctgaatca
tgtcaatttgaaattgataagatcaaggagtcaagtcctctccaaattttcaaggaaagt
gcagaaaatttgcttgattcgacataccataacatcacttgcatggacattgattcttat
aagggttttagcaattgtttgttgcaaaataatgttatttcagatcccgtacctcagttt
gtagatgagcatgatatgctaaattcttgttctaagtacatgtgttctaaagaagtagga
aactcgagtgaggcggcagcttctgatgctacttcacctaagtttcaggatgccaaaata
acatatcaacaagttgagttttcacctcccttttgttctttgctcagcaaatcaggtact
aaatctactaatggctactcgttaatgaaaaatatgaactatggctcgccatactactca
aggcatagcgaatcgaattgcagtattgattggtcaagaagtgacttgtcttgtgaggat
atagatctcatgatttctggttataacattaagcatttaaactacagaagtacatttcct
tgtgaaatagttgatgtctctattccttcttttccaacagttagaaaatgccagacaatt
aggcatccttatgtctcatctagtgatttgatcagcccttattcctttggtcatgattgc
ttaagcagttcccaggggtttgatattggtctaggagagtgggcaattagtccccattat
gaaattcctggcttatgtgcctggcctacaagatcaactgtggaggaatttggtcctaaa
aataggagcccttcagaaagcaaattgatgccttttgaaggttatgaaaattggccttgt
cagaaatcagaatgcaaagatgaatgtctgagtctaactcaggatagttcaactgttctt
tttccacgcgaaagatgcatggcaaccaaactggactggaatttctcaccaagtcccatg
agtaaaacacacagttttcaacttgcagatgatatggactcggaaaatgtttgctcattt
cctacagtagctaagttggactggaatcactctcaaaatccgttgagaaaaacatatagt
ttttgccctaaagatgatatggtatttgacaatatttgcttatctggtaaggtaaatgat
gatattagctgcttttcaataggaactttggattgcaattacatggaggataagcccaaa
tgggatgctgtgcaaaaggatagtgtgaaggtaggaaatttgcaggatgcccaagaattt
caaagtaaacgtttacctttgaattacatggaaagatcaagaagtcagtcagctcctccc
ttttacagaggcaagtgcaagttctctgtccttggttgtccgactaccgtagctgtgaag
aaatctagttctccattctccaaaaaatcaattggtgatttgtcacacccttatgcatct
cagccgctcctgcagcctttcgcctctgaggattgcctgcaagattccatagaacccagt
agtgaaaagataaacatttatgatgtaagataccgctgcccagacaatgcaatcaatgat
atacaagaagattcaacatctgtgttggttaaatggcgtcctggagtttaccagactaag
gatggtggcagttcacagaaatctttccaacaggctgatgatatacttgacatttcttct
ggtctcctacatttcactggtgactcattagttcctgaattaattgataaaaattgcctg
catgatgctagggttctccttcagttggacaataaatatattccagtgatggctagtgga
aatttgatggtcattgatcagcatgcagcagatgaacggattcgtttagaagaactgcgt
cgaaaagttctgtctgatgaaggcagagaaattacttacctagattcagaggaggagttg
gttcttcctgagatggggtttcagctgttgcataagtatgctgagaagataaaggcatgg
ggttggatttttaatagtcaaagccaattgcctgagttattccagaagaacctgaaccat
tttaaaagaaaccaatgtggtgttactcttgttgccgtgccttgtatcttaggtattaat
ttgaccatcaaggatcttcttgagtatatcgagcagcttgtcgaaactgatggatcatca
agtcttccaccttctgttcttcggattcttaattccaaagcttgcagaggcgcaattatg
tttggtgattctttgttaccctcggagtgttctttgattgtggaagaactgaaagcaaca
tccctatgttttcagtgtgctcatggaaggccaaccatggcccctcttctgaacatctcg
gcgcttcatgagcagttggagaagcttaaattcaacaatgggggcgcaaatgaggcatgg
catggactccgccatcatccccgtagcattcatcatgcgcaaatgcttctagactccagt
aataggttttgcggtggatga
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