Zingiber officinale (ginger): 121976294
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Entry
121976294 CDS
T08725
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121976294
03460 Fanconi anemia pathway
121976294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121976294
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121976294
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121976294
FA (Fanconi anemia) pathway
Downstream FA components
121976294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Motif
Other DBs
NCBI-GeneID:
121976294
NCBI-ProteinID:
XP_042384337
LinkDB
All DBs
Position
4B:120643969..120656949
Genome browser
AA seq
1253 aa
AA seq
DB search
MAASPTPLQNPNAGKARPGAYQIGGVPVEFPYKPYGSQLAFMGRVIHTLDRARRQGRCHA
LLESPTGTGKSLSLLCSSLAWQRHQTSRFLSGHAAPSQGLPPPPTSDPLVSGGGFIPETQ
PSNDAEQSSTPASARAQRRQTSPKIYYATRTHSQITQVIREYRKTSYRVPMAVLASRKHY
CTNKFVCTKANLDEECKLLLKGEALGCSEFKNANKVKNHPSLQKGGCYEVHDIEDLVKVG
KSVKGCSYFAAQTLAEEAQLVFCPYSYIVNPIVRRAMDIDLKGAIVILDEAHNIEDIARD
SGSLDVEEDVLFALQAELGQLCMADNDAAVYQPLYDIIQGIISWMGERKMGLQQCEFEHY
SSFWTADKAISELQHAGITQQCFPILQECATKAIKATSDAESVESHLSGMSAIALEGLFS
SLTYLFSGDGTNATDYQLGLQRYVKRDNSNAVSDWICKLSLWCLNPALVFREIANLSLSV
ILTSGTLSPMGSFASELGVQFEACMEAPHVIDPESQLWAAVVSTGPGNCQLNASYRTADG
FAFQDGLGVTLEEICKIAPGGILVFFPSYKLLEKLRRRWTQTGQWSRLNAEKPLFVEPRG
ATDEFDSLLRGYYDAIRGSTKVVHEKSRLGSRRTIKQPCSKVCSQNTPRGAAFLAVCRGK
VSEGIDFSDENARVVVVVGIPFPNKNDIQVMLKKKYNDTHRSTKHLLSGSEWYCHQAFRA
LNQAAGRCIRHRFDYGAIIFLDERFKEERNLTYISKWLKNSIKYFHSFNESLVGLQNFFE
SAQKRFGPASSHSRSEDVSLIEKDPDFSEQNSNLNQGIQLQKTKKDNVNYQNARKMSNQN
GAVSAKLTKSSKLDKKGPFLKDQSQNGVEGASETIIKCLNPHTDFADLKSSTTIQFQCLE
TISAKSCKADLHQPLATTNSIVRDHNATPKSLEVEMIQQTVGNFSPKTISIGSISDTACT
PEHSPEDIKETDSLNMSVNSYNHKRKRINLQMSVCNQIDCLSSDTDSFYPVDSISSISRE
TDLIPESPCLDNSSVNRQRKLIGNVVDTLTKMLEVSCLYCRSPLGLQENDLLVNCSLTSS
SKVYLAYVLKHGPPKDSSFNYTPTTPERDVPVVVCDSSSVNHRVFDNGCKEAVSHGIWSE
KDSCVFRSLICPFCTVPRCLGVQIIAADASNSHLLNKVLLFADHLDINDQQKPNQKDVTP
ICSTVPGKESASLEIEKYAYTPTLPKPDLNTRKLKQLSLPKRVECSLEHQDVL
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctcgccgacaccccttcaaaaccctaacgccggcaaggcccgccccggtgcc
taccagatcggaggcgtccccgtcgagttcccttacaaaccctacgggtcccagctcgcc
ttcatgggccgcgtcatccacaccctcgaccgcgcccgccgccagggccgctgccacgcc
ctcctcgagtcccccacaggcaccggcaagtccctctccctcctctgctcctccctcgcc
tggcagcgccaccagaccagccgcttcctctccgggcacgccgctccgtcccagggcctt
ccaccgccgcccacctctgatccccttgtaagtggcggcggattcatccccgagacacag
ccttctaatgatgctgagcaatcatcaacgccagcaagtgctagagctcagagaagacag
acatcgcctaaaatatactatgccacgaggactcactcgcagataactcaggtgattcgt
gaatacaggaagacatcttatcgagtgccaatggcagtgctggcttcacgcaaacactat
tgcaccaacaagtttgtgtgcactaaggcaaatttggatgaagaatgtaaattgcttctg
aagggtgaagcactgggatgctctgaatttaaaaatgcaaataaagtcaaaaatcatcct
tcacttcagaaaggtggctgttacgaggttcatgacattgaagatcttgtaaaagttgga
aaaagtgtaaaaggttgttcatattttgctgcacaaacgttagcagaggaagctcaacta
gttttctgtccttacagttacatagttaatcctatagttcgcagagccatggatatagac
ttaaaaggagccattgtgattctagatgaggcacacaacatagaggacattgcacgtgat
tccggaagtctagatgtggaagaagatgtactttttgcattgcaagcggaactaggacaa
ttatgcatggctgacaatgacgctgcagtataccaacccctgtatgacataattcaggga
ataataagttggatgggtgagaggaagatgggcttgcaacaatgtgaatttgagcactac
tcttcattttggactgctgataaggccataagtgagctccaacatgctggaattacacaa
caatgtttcccaatcttgcaagaatgtgcaacgaaggcaattaaagctacctcagatgca
gagtctgttgaaagtcatttaagcggcatgtcagcaattgcattggagggcctattttcc
tcgcttacttatctcttctcaggagatggtactaatgcaactgattatcagctagggttg
cagcgatatgttaaaagagataacagtaatgctgtgagtgactggatctgcaaattgagc
ttgtggtgcctaaatcctgctcttgtctttagagagattgcaaatctttctctttcagtt
atccttacatcaggaactctctctccaatgggttcatttgcatctgaacttggagtgcag
tttgaagcttgcatggaagcaccacatgtcattgacccagaatctcagctttgggctgca
gttgtttccactggtcctggaaattgtcaattgaatgccagctatagaactgctgatgga
tttgccttccaggatggattaggagttactttggaagaaatatgcaagattgcaccagga
ggaattcttgttttctttcctagctacaaattgttggaaaagcttcgtcgtcgctggact
cagacaggtcaatggtctcgtttgaatgctgaaaagccactgtttgttgagccaagagga
gccacggatgaatttgattctcttcttagaggctattatgatgcaattcgtgggagtaca
aaagtagttcatgagaaaagtagacttggttcaaggcgaaccattaaacaaccttgcagc
aaggtgtgctcacaaaatactccaagaggagctgctttccttgcagtttgccgaggcaag
gtatcagaaggaattgacttctcagacgaaaatgctagagtagttgtggtggttggtatc
ccttttccaaacaagaatgacattcaggttatgttgaagaagaagtataacgatacacat
agatcaacaaagcatctccttagtgggagtgaatggtattgccaccaagcattccgtgct
ttaaatcaagctgcaggtcgttgcataaggcacagatttgattacggagccatcattttt
cttgacgagcgattcaaggaggagcgaaacctaacttacatttcaaagtggttgaagaac
tcaatcaagtatttccatagcttcaatgaatccctagtgggattacagaacttttttgaa
tctgctcagaagcggtttggtcctgcgagtagtcattcaagatccgaggatgtttctctg
atagaaaaggatcctgattttagcgagcagaattcaaatttgaaccaagggattcaattg
cagaaaacaaaaaaagacaatgtcaactatcagaatgcaagaaaaatgagcaatcaaaat
ggagcagtttctgcaaaactgacgaaatcatccaaacttgacaagaagggtcctttcctg
aaggatcaaagtcaaaatggagtcgaaggtgctagtgagacaatcatcaaatgcttgaac
cctcatactgattttgcggatttaaaatccagtaccacaattcagttccaatgtttggag
accatttctgctaaatcatgcaaagccgatttgcaccagcctttagccactacaaattca
attgtaagagaccacaatgctactcccaaaagtttggaggttgaaatgattcagcaaact
gtaggaaatttttctcccaagacgatctctatcggaagcatatctgacactgcctgcaca
ccagagcattctcctgaagatattaaagaaacagattccttgaacatgagtgtaaactca
tacaatcacaaaaggaaaagaataaatttgcaaatgtctgtttgcaatcagatcgactgt
cttagttctgatactgactctttctacccagttgattctatcagcagcatatcaagagaa
actgatctgatacctgaatcaccatgccttgataacagttcagttaaccgacaacgaaag
ctcattgggaatgtggttgatacattgacaaagatgctagaagtaagttgtttatactgc
agaagcccactggggttgcaagagaatgatctcttagtgaactgttcattgacttcatcc
tccaaagtctatttggcatacgttctgaagcatggacctccaaaggacagtagtttcaat
tatactcctactacaccagagagagatgtgcctgttgtagtctgcgacagttcatcggtc
aaccatcgtgtttttgacaatggctgcaaagaagcagtttcacatggtatctggtctgaa
aaagatagttgtgtattcaggtctcttatttgccccttctgcaccgtcccaaggtgctta
ggggtgcagatcattgcagcagatgcatccaatagtcacttgttgaacaaggttctactt
tttgcagatcatttggatataaatgaccaacaaaaaccaaatcaaaaggatgtgacgcct
atttgttccactgttcctggcaaagaatcagcatcacttgagatagagaaatatgcatat
actccaactctgcccaagcctgacctcaatacgagaaaactaaagcagctcagtctcccc
aaaagagtcgagtgttctttagagcatcaggatgtactctaa
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