Zingiber officinale (ginger): 121976297
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Entry
121976297 CDS
T08725
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121976297
09123 Folding, sorting and degradation
03018 RNA degradation
121976297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121976297
03041 Spliceosome [BR:
zof03041
]
121976297
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121976297
mRNA cycle factors
Stress granule specific factors
121976297
Spliceosome [BR:
zof03041
]
Complex C
Other components
Complex C specific factors
121976297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_5
RRM_7
RRM_RdRP1_2
RRM_3
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
121976297
NCBI-ProteinID:
XP_042384380
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All DBs
Position
1B:complement(86330966..86334896)
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AA seq
633 aa
AA seq
DB search
MEAVDESTAAAAAEHSPIALYVGDLSPDIGEEHLVGLFSAIGELTSVRVCKDSATGVSLG
YGYVNYISIQDAISAMEKLNHTPLNGKPIRLMWSRRDPNARSSGIGNLFVKNLSSYIHNG
MLYDMFSKFGTILSCKVATDENGRSKGFGFVQFDSQESANSAIQALHGSSCEGKTIYVAN
FVKKSERLPSPDAQFTNLYMKNLDQDITEELIKLKFSEFGKISSVSIAKDDDGNSKGFGF
VNFESHDSAKRAMEAMNGLPLGTNTLYVARAQKKAERLQILRRSYEEKKSEQMRKYMASN
IYVKNLDDAVDDHVLRDRFSEYGNITSAKVMLDDKGRSKGFGFVCYSCPEDANKAVNNLH
GCMFHGKPLYVSIAQRKEDRRAQLQLQYAQRLSGSPAAVMPPAYTPLYYASSAVVAQVPP
RDGLMYHQPFALSPGWRPNGFVAPSRPTYQAMPFPAMANTSRQHRQNRGRTNGNRLLQSG
QPNAYLPQWHHANHSLNGGKDFITHQRPGQINYLPNGRPVNNASLTSPGSSSSHGTEMLS
TMLAAATPQQQKQILGEHLFPLVENLKFDLAAKITGMLLEMDNSELLLLVESPESLAAKV
EEAVQVLKDSQARVGAPQERMHSNYLASDVAVN
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcgatgagtctaccgccgccgccgccgcggagcacagtccaattgcgctc
tacgtcggggacctctcccccgacatcggagaggagcacctcgtcgggctgttctctgcc
atcggagaactcacgtccgtaagggtctgcaaggattccgccaccggcgtctctctcgga
tacggctacgtcaattacatttcgatccaagatgcaatttctgcaatggagaagttaaac
catactcccctaaatggcaaaccaattagattgatgtggtcgcgtagagatccaaacgca
aggagcagtgggattggtaacctttttgtgaagaaccttagcagttatatccacaatggt
atgctttacgatatgttttccaagtttggaacaattttgtcttgtaaagttgccacagat
gaaaatggaaggagtaaaggattcggatttgtccagtttgattctcaagaatcagcaaat
tcagccattcaagcccttcatggctcttcatgcgaaggaaagacaatttatgttgctaac
tttgtgaaaaagagtgaacgattgcccagccctgatgctcaatttactaacttatacatg
aagaacctggatcaggacataacagaagaacttattaagctcaagttctctgagtttggc
aaaatatcaagtgttagcattgcaaaagatgatgatggaaattcaaaggggtttggtttt
gttaactttgaaagccatgacagtgcaaaaagggcaatggaagcgatgaatggtctccca
cttggaaccaacaccttatatgttgcaagggcccagaaaaaggcagaaaggctacaaata
ttacgtcgttcttatgaggaaaagaagagtgagcaaatgaggaaatacatggcatcaaat
atctatgtcaaaaatcttgatgatgctgttgatgatcatgtattgcgggatcgctttagt
gagtatggcaacataacttctgcaaaagttatgcttgatgataaagggagaagtaaaggt
tttggatttgtatgctacagttgccctgaagatgctaacaaagctgtgaataacttgcat
ggatgcatgttccacgggaagccattgtacgtctcaattgcacaaagaaaagaggataga
cgagctcaattgcagcttcaatatgctcagcgcctgtctgggtctccagctgctgttatg
cctcctgcttatacccctctttactatgcttcttcagcggtcgttgcacaagttcctcca
agggatggtcttatgtatcatcaaccttttgctctcagccctggctggagacccaatgga
tttgttgccccatcaagaccgacttaccaggcaatgccatttcctgcaatggcaaacact
tcgaggcaacacagacaaaatagaggcaggacgaacgggaatagactgcttcaatcaggc
cagccaaatgcatacctacctcagtggcatcatgcaaatcattctttgaatggcggaaaa
gatttcataacccaccagagacctggacaaatcaattacttaccaaatggtcgtccagtt
aacaatgcatccttaacttcacctggctcctccagctcgcatggaaccgaaatgctaagc
accatgcttgccgctgcaactccacaacaacaaaagcagattcttggcgagcatctcttc
cccttagtagagaacctcaagtttgatctcgccgccaagattactggaatgctgttagag
atggacaacagcgaactactgctgctggtggagtcaccagagtcactggctgccaaggtt
gaagaagcagtacaagttctcaaggactcccaagccagagtgggcgctcctcaagagagg
atgcactccaactacttggcgagtgacgtggctgtgaattaa
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