Zingiber officinale (ginger): 121976298
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Entry
121976298 CDS
T08725
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20-like isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121976298
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121976298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
121976298
NCBI-ProteinID:
XP_042384346
LinkDB
All DBs
Position
1B:complement(122625711..122645942)
Genome browser
AA seq
2705 aa
AA seq
DB search
MTTSQSQAVKSLNTSAGRRRFTFKSFSQRVEEIQINVFHSLDSVKAQPSDGSSFLRESLI
YWKELNTAEDFISFYENMMPFVQTLSQVILHKETIMTELLDKVKIEAILSLEPILRLIAA
LSRDLLDEFLFFLPRLVDSLVILLKNGGDRDPEVIEQIFTSWSYIMMYLQKYLVRDLVYV
LKITADLRYFPKHYVQEFMAESVSFLLRNSCKGQLQKGVRKAIREAAKTKSSEDAESKSS
SSINGVSALLWYAMRGVSLLLHSRAETVWQILIDTSTFTMVEKYTKGSKALLEVTSGILR
HLCTAIDPKELEVIYNCLFEETSKCITNRYLDQLNHLLSLLVFLIDGNKIIDGPKLLNLV
DSFVQSFVVPSIGVKVESVTHKVLKKVLKLMLHLLDIPSISVDISSILPLYVPAFKLNSS
SLCPFLDELILKEPQIVQVFRSHILSAMDDLIEDSPEETLSLMLTFFAKQSKYENCYIVE
VSEDKVHMLCNFLREKIVYWIKLFGTAESNNQLYKQIPESEVAILWGVICCFPYFPILHE
KFGLFKELINSIDQFLEAETDKIENMLKSTWQGILGGVLSSYHKLLLVNKLATSEVKTFL
NLAKKHKSSLQVLSSVAEYLDSISGTEFEEDSSLKAFQKVDEQDAVDAVISLAVNLSHPN
KAICLSTLRILFHYRPRVDALPSNDIRPCKKLKTDQSGANNEISQHTDVIKLLLSVEATP
LSIFTSRNAIVLLQNLQISLSSGRIGDSYIPLLFNGIIGILHNRFSQIWEAALECLATLI
SQYKELVWIYFVHYLDLSQSKIISENPQLEAVTQELNDDNSDDDIVVIAPASADFSLVKR
FKLYLAPAFDCTPSVTIITLLLHSLQKISDIAESRSRQLIPLFLKFLGYGANDNFSFESY
AGHACQRKDWKVILKEWLNLLVRMCNAKSLYQSAVLKEVLMKRLLDDVDADIQLKVLDCL
LNWKDDFLISYEKHLKNLIISKNLREGLATWSVSKESQCIQEEHRCHLIPILIRLLTPKV
WTLKTLGSRKHTGLALRKAILCFLAQLEVDELLLFFMLLLKPLLPRPRANEVLDVQTAEA
STNITHGSSSSILNKYSTSILVADLSWKQKYGFLHVIDEILRIFDEAHIKPYLNALLKIV
GWILESCMPNLSSGDSLSNSKMTSKQLKDLRSLCLKIISFVLNKYVNHDFESDFWDIFFR
STKPLLDSFKHEGSSGERLNLLLSCFISMSKSTKLLSLLEREANLVPTIFSALSLSTASD
AIIYPVLEFIENLLNLDNSEDHLENKSVKNLLVPHIDVLIQSLHGHLLSRNEAYRKSINW
PGNAESRVLKLLARYIVDPVVAGQFVDILLPCFKKKNLNIDDALSGLLVLKGTLSVVGSE
SYEKILKAILPLLVSSGLDVRLCICDILHGLKDIDSSIASVAKLLCDLNAVSSSLLGELD
YDRRISAYEKIKPGLFSELKVEHVMLILSHCVYDMSHVELIFRQSASNALLSFIHFAASV
LENSEDNSSKMLLNNETQEVPEDHILKKEDSQSKWTKKSIKQIVNTTFLSNVGGALNKDI
SVLREWFAVLRGMVYYLNGLPSLNPLKSLYSEDDEVDFFNNIVHLQIHRRKRAVLRFRNI
LGSGNLTEDLIAKIFLPLFFKMLLDQDGKGLDLANVCLDTIASIAGHMQSWDSYRSLLMK
SFKEIAQKPDKQKVLLRLICAILDNFPFSNKEIPKALNDQSEISAPEAKANLSNVEALKY
LQNVFFPQIQKLLTSDTLNVNVNFNLAAIKVLKLLPVEIKDSHLSTIIHRVCCFLKNRLE
SIRDEARSALVACLKELGLKYLQYVVKVLQAILKRGYELHVLGYTVNFILSKTLVNIDAG
ELDYCLEDLLTVAEADILGDVAEEKEVEKIASKMKETKKKKSYETLELIAQRITFRTHAI
KLLSPISAHLQKHVTPRVKVRLQTMLQHIALGIERNSSVETSELFHFVYELIKGSFSPEG
SQGYWISNEGIQKTSVGKMSQKMRISNSSKHDSHNTHLIVVFALGLLLNHVKKLMKMELL
KNDEQLLSMLDPFVSLLSNCLCSKYEDVLAAAFRCLALLVTKPLPSIETHADNITSLLLE
IVQKSGNVGSSLVQSCLKVLTVLLRRTSISLTNRQLQLLIHFPVFMDIQTKPSPIALSLL
KSIIHQKLVVHEIYDIVVQVAELMVASHSEPIRKKSNEVLLQFLLNYPLSDKRLQQHMDF
LLANLSYEHLSGREVVLQTLYDILKKFPASVVDSQAQSFFLHLVVALANEQDIKLRGMIC
GAMKVLLDRISQHVMHSIVSYTISWYTGEKSHLWSASAEVLSLLVQVMKKDFWFKIGNIL
QVMRDRLKSSAHAAGSSKDDILKDAAVPLWKEAYYSLILLDNMLQHFPDLYFEENVQEIW
MIICKLMLHPHTWVRCISSSLVHSYFTTVKETSKRDDQKLKSRSYFLLCPSRLFAIAALC
LNQLKTHLIDEKTSNLIRENLVFSTCALHSRLANTPVPHKYWSTLDSHEQSIFLEAFEIL
GSRGTKDAFLLSTTARSDSLEKINHIYEDKQDLRSLLVIPLLKSMGKISMQMRDTQMQVI
FDSFTMMFKQIDSEGLQAYATYILIPLYKVCEGFSGKVISDKTKQLAGVVCDALRDKIGV
ENFVHIYNVLRQKFKEKREKKRNMQKQLAVINPMRFAKRKLQLAAKHTVHKRRRIMSMRM
QQGRS
NT seq
8118 nt
NT seq
+upstream
nt +downstream
nt
atgacgacctctcagtcacaggccgtcaagtctctcaatacgtccgccggccggaggcgc
tttacgttcaagagtttctcccagcgggtggaagagatacagatcaatgtttttcatagt
ctggactccgttaaagctcaaccatctgacggctcatcattcttgcgagagagccttatt
tactggaaggaattgaatacggcagaagactttatctccttttatgaaaacatgatgcca
tttgttcagacgctatcgcaagttatactgcacaaggaaactattatgacggagctcctt
gataaagtgaagattgaagctatattgtctcttgagccaattctaaggttaatagcagct
ctatccagagatttgctggatgaatttctattttttcttccaaggcttgtagattcattg
gtgattctactaaaaaatggtggcgaccgtgatccagaggtcatagaacagatattcact
tcttggtcatatatcatgatgtatttgcagaagtatcttgtaagggatcttgtttatgtc
ctcaaaattacagcggacctaagatatttcccaaagcactatgtccaagaattcatggct
gagtcagtttcattcttgttgaggaattcatgcaaagggcagcttcaaaaaggtgttagg
aaggctattagagaggctgctaaaaccaaaagctcagaggatgctgaaagtaaaagctca
tcgtccataaatggagtttctgctttgctatggtatgcaatgagaggggtttcgctacta
cttcattcaagagctgaaactgtctggcagattttgattgacacatcaacttttactatg
gttgaaaaatataccaaaggttctaaggctcttttagaagttacatcaggcattcttcgc
catttatgcactgcaattgaccctaaagagttggaagtaatatacaactgtttgtttgaa
gagacatctaagtgcatcaccaatcgttacttggatcagctaaatcacctgttgtctctt
cttgtttttcttattgatgggaacaaaattattgatggaccaaagttgcttaatcttgta
gattcatttgtacaatcgtttgttgtaccttctattggtgtgaaggtggaatccgtgaca
cataaggttcttaagaaagtcctgaaattgatgctgcaccttcttgatattccatccatt
tctgttgatatatccagcatcttgccactatatgttcctgcatttaagttgaacagctct
agcctctgcccttttttagatgaactcatcctgaaggaacctcaaattgtacaggtattc
agaagccatatattaagtgccatggatgatttaattgaagattctcctgaagaaacctta
tccttaatgttaacattctttgcaaaacagagcaaatatgagaactgttatattgttgaa
gtttctgaagacaaagttcatatgttatgcaatttcttaagagagaagattgtgtactgg
atcaaattatttggtactgcagagagcaataaccaattatacaagcaaatacctgaatct
gaagtggccatcttatggggagtaatctgttgtttcccttattttccaattttgcatgag
aaatttggactttttaaagaactgatcaattctattgatcagtttctggaagctgagact
gataaaatagaaaatatgctgaaatctacttggcagggcattcttggtggtgtgttgagt
tcgtatcataaactgctgttggtcaataaacttgccacttcagaagtaaagacatttttg
aatcttgcaaagaaacacaaatcatctcttcaagtattgtcatctgtagctgaatatttg
gattctatttctgggactgaatttgaggaggattccagtctgaaagcatttcaaaaagtt
gatgagcaagatgctgtggacgcagttatctcattagcagtcaatttgagtcatccaaat
aaggccatttgcttgtccactttgagaatattgtttcactatagaccacgtgttgatgct
cttccttcaaatgacatacgtccttgtaagaagttaaaaacggatcaatctggagctaac
aatgaaatttctcaacacactgatgttatcaaacttctcctttcagttgaggcgactccg
ttatcaatttttacaagccgtaatgctattgtacttctgcaaaacttgcaaattagtctt
tcttctggacggattggagattcttatattccccttttattcaatgggattattggaatt
ctacataatcgctttagccaaatatgggaagctgcactagagtgcctcgctactttgata
agccaatacaaggaacttgtatggatttattttgtgcattatcttgacctatctcaatcc
aagattatttctgaaaatcctcagctggaagctgtgactcaggaactcaatgatgataac
tctgacgatgacattgttgtcattgctcctgcttctgctgatttttctttggttaaacgc
tttaagttatatctggctcctgcttttgattgtacgcctagtgtgaccataataactcta
ttacttcattcgcttcaaaagatttcagacattgctgaatctaggtcgcgacaacttata
cctttgttcttgaaatttttgggttatggtgcaaatgataatttcagttttgagtcatat
gctggtcatgcttgtcagagaaaggactggaaggtgattctaaaagagtggttgaactta
ctggtacgaatgtgtaatgctaaatctttgtatcaaagtgcagtactcaaggaagttctg
atgaaaaggcttctagatgatgttgatgcagacatacaattaaaagttcttgattgctta
ctgaattggaaggatgactttctgatctcatatgagaagcatctcaagaatttgatcata
tcaaaaaacttgcgtgagggacttgctacgtggtctgtttcgaaagagtcacaatgcatt
caggaagaacataggtgtcatcttattcctatactcatcagattgttaacaccaaaagtt
tggacactaaagactcttggttcaagaaagcatacaggtttagctcttagaaaagcaatt
ctatgtttcttggcccagcttgaagttgatgagcttctgctttttttcatgttactttta
aagccattattgcccaggccaagagcaaatgaagtgcttgatgttcagactgctgaagca
tctacaaacatcacacatggatctagctcctccatccttaataaatattcaacatcaatt
ctcgtggctgacctgtcatggaaacagaaatatggttttctacatgtcatagatgaaatt
ctaaggatttttgatgaagcacacatcaagccatatctcaatgcattgctcaagattgtt
ggctggatattagagagctgcatgccaaatctttcaagtggagatagtttgagtaactca
aagatgacttcaaagcaattaaaggacttgagatccttatgcctaaaaattatttctttt
gtgcttaataagtatgtgaatcatgactttgagtcagatttctgggacatctttttccgt
tccacgaagcctctgctagacagcttcaaacatgagggttcaagtggtgaaagactaaac
ctacttctttcttgctttatttcaatgagcaaaagcaccaaactactttcattattggag
agggaggcaaatcttgtccctacaattttttcagcgctatctctaagcactgcgtccgat
gcaatcatatatcctgttctcgaatttattgaaaatttgttgaatctcgataacagcgag
gatcatctagaaaataagtctgtaaaaaatcttttggtgcctcatatagatgtacttatc
caaagtcttcatgggcacttgctgtctcgcaatgaagcttacaggaaatcgatcaattgg
cctggtaatgcagagtcaagagtattaaaattgttggctagatatattgttgatcctgtt
gtagccggacaatttgtggacatactgctgccatgtttcaagaagaaaaacttaaatatt
gatgatgctttgtcaggtttactggttcttaaaggtaccctgtccgttgtaggatctgaa
tcatatgagaaaattctcaaggcaattctgcctttgctagtttcttctggattggatgtt
cgattgtgcatttgtgatattcttcatgggcttaaggatattgattcttcaatagccagt
gtggccaagcttttgtgcgacttaaatgctgtttcttcctcgttacttggagagcttgat
tatgacagaagaatcagtgcttatgaaaaaattaagccaggattgttttctgagctaaaa
gtagagcatgttatgctgatactttcacactgtgtatatgatatgtcacatgtcgaatta
atttttcgacagagtgcatctaatgcactgttatcctttattcattttgctgcatcagtg
ttggaaaacagtgaggataattcctcaaagatgctgttgaacaatgaaacacaggaagtc
ccagaagatcacattctgaagaaggaagatagtcaaagtaaatggacaaaaaagagtatt
aagcagatagttaatacaacttttctctccaatgttggtggtgccttaaacaaagatatt
tcagtgttaagagaatggtttgctgtcctacggggtatggtatattatttaaatggatta
ccatctttaaatccactcaaatctctctacagtgaggatgatgaagtagacttttttaac
aatattgtccacttacagatacatcgaaggaaaagggcagtattacgttttagaaatatc
ctgggttcagggaacttaacagaggaccttatcgccaaaatcttccttccactatttttc
aagatgttgctcgatcaagatgggaaaggattggatttagcaaatgtttgtttagataca
attgcctctattgcaggtcatatgcagagctgggattcctatcggtccctattaatgaaa
agttttaaagagatagctcaaaaaccagataaacaaaaagtgttgttgcgtttgatatgc
gccatccttgataatttcccattttcaaacaaggaaattcccaaagctttaaatgatcaa
agtgaaatttctgctcctgaagccaaagccaatttatcaaatgttgaggcactgaagtat
ttgcaaaatgtattctttccacagattcaaaaactacttacttctgatacactaaacgtc
aatgtgaatttcaatcttgccgctatcaaagtactaaagttgctcccggtggaaatcaag
gactcacatctttcaaccataatacaccgcgtatgctgttttttaaagaatcgcttggaa
agcatacgtgatgaagcaaggtcagctctggtagcatgcttgaaggagcttggactgaaa
tacctgcagtatgtagtcaaagttttgcaagcaatattgaaaagaggatatgagttgcat
gtgttgggttacacggtcaacttcatattatcaaagactctggttaatatagacgccggt
gaacttgattactgtctggaagacttgctcactgtagctgaggctgacattcttggagac
gttgccgaggaaaaggaggttgagaagatcgcctctaaaatgaaagaaacaaagaagaaa
aagtcgtatgagactcttgaactaattgctcagagaattaccttcaggactcatgctatt
aagttgctttcacctatcagtgcacaccttcaaaaacacgttacacctagggtgaaggtg
aggcttcagacaatgctacaacatattgctcttggcatcgaacgcaactcttcagtcgaa
acttcagaactttttcattttgtctatgagcttattaaaggtagtttcagtccagaaggt
tctcaaggctattggatatccaacgaagggatacaaaagacatctgttggcaaaatgtca
cagaaaatgagaatttcaaattcttccaaacatgattcacataacactcatctgattgtt
gtatttgcgcttgggttacttcttaatcatgtgaagaaattgatgaagatggaattgctc
aagaatgatgagcagctattatcaatgttagacccctttgtaagcctattgagcaattgc
ttatgttccaaatatgaagatgttctggctgctgctttcaggtgtcttgctctgttggtg
acgaaaccattaccatctattgaaacccatgctgacaatattacaagtttgctcctagaa
attgtccaaaaatctggaaatgttggaagttcactggtgcagtcctgtctgaaagtcctc
acagtattattgagacgcactagtatttctcttacaaatcgtcagctgcaattattaatt
cactttccagtttttatggatatccaaacaaaaccatctcctattgctctttctcttttg
aagtcaataattcaccaaaagcttgttgtccatgaaatatatgacattgttgtgcaagtt
gctgagttgatggtggcaagtcattcagaaccaattcgcaagaagagtaatgaagttctg
ttgcaatttcttcttaattaccctctgtctgataagcgtttgcaacaacatatggatttc
ttgttagcaaatctaagctatgaacatttgtctggaagagaagttgtgctacagactctg
tatgatatattgaaaaagtttcctgcaagtgttgtggacagtcaggcacagtcatttttt
ctgcacttggtggtggccctagcaaatgaacaagatatcaaactgcgaggcatgatttgt
ggagccatgaaagttctgttggatcgcataagccaacatgtgatgcattccattgtgagc
tacacaatatcatggtacacaggtgaaaagtcacatttgtggagtgcttcagctgaggtt
cttagcttgttggttcaagttatgaaaaaggatttctggtttaagattggtaatatattg
caagttatgagagatagactcaaatcttctgctcatgctgctggtagcagtaaagatgac
attttgaaagatgctgcagttcctttatggaaggaagcgtattattcacttattttactg
gacaacatgctacaacacttcccagatttatattttgaagagaatgttcaggagatatgg
atgataatatgcaaattaatgctccatccacacacttgggtacgatgtatttccagcagc
cttgtgcactcttatttcactacagtcaaagaaaccagtaaacgtgatgaccagaagctg
aaatctagatcctattttctcttatgcccaagtagactttttgctattgctgcattatgt
ttgaatcagctgaagacccacctgatcgatgaaaaaacaagcaatctcataagggagaat
cttgtattttcaacatgtgctctgcattccaggcttgcaaatacaccagtacctcacaaa
tattggtctacccttgattcccatgagcagagcatctttctcgaggcttttgaaattctt
ggttcaagaggcacaaaggatgctttcttgttatctactactgctcgaagtgattcattg
gagaagattaatcatatttatgaagacaagcaagatctcaggtcattgcttgttatacct
ctgttgaagagcatgggcaaaatttcgatgcagatgagggacacacagatgcaggttatt
tttgattccttcacgatgatgtttaaacagatcgattcagaaggtttgcaggcatatgct
acctacattctgattccactatataaagtttgcgaaggattctctgggaaggtcatcagt
gataaaaccaaacaattagcaggagtagtatgtgatgccttaagggataaaattggtgtc
gaaaactttgtgcatatctacaatgtattaaggcagaagttcaaggagaagagggagaag
aagagaaacatgcaaaagcagcttgctgttatcaatccaatgcgttttgccaagagaaaa
ttgcaactggctgccaaacatacagtccacaagaggagaaggataatgtcaatgaggatg
caacaaggaagaagttag
DBGET
integrated database retrieval system
