Zingiber officinale (ginger): 121976328
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Entry
121976328 CDS
T08725
Name
(RefSeq) U3 snoRNP-associated protein-like YAOH
KO
K14793
ribosomal RNA-processing protein 9
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121976328
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
Other 90S particles
121976328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_SCAP
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
TFIIIC_delta
Motif
Other DBs
NCBI-GeneID:
121976328
NCBI-ProteinID:
XP_042384385
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All DBs
Position
4B:complement(121855439..121860517)
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AA seq
515 aa
AA seq
DB search
MPPRSRKRVVGGPKAVKKKARSSDNAFFEPEPKRSRRGGGLDDDIESLESDEEMSEQDSE
DEEEETAGEKRIRVAREHLNKVRAIAMRVHEDEGEEEEGDEGRYEREGKRDSLVAELLQK
EQLEGSGRLQRVIATRVLRPEPDDKFRMLVKHHLSVTAVALAEGDSKGFSASKDGVIMHW
DVETGKSEKYLWPSEDVLLSHQAKPPQNSAKKRSKNVLALAISSDGRLLASGGLDRHIHL
WDTRTRGHVKAFHGHRGPVSCLTFREGTPQLFSGSFDRTIKLWNAEDKTHMDNLFGHQSD
ILAIDCLRRERLLTVGRDRTMRLWKVPEESQLVFRAPASSLECCCFINDSEFLSGSDDGS
IELWSLKRKKPTHLIKNAHAPSLLNYSHSYEENGTTTCNGGDIDNGCKKKESHSSAHSWI
SSVAVCRGSDLAASGAANGVVRLWSIQSESSGIRPLYDSSLAGFVNSLVFAKSARFLVAG
VGQEPRLGRWGRVSSARNGVAIHPIKLKDEHLSIA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgcgcagtcgtaagagggtcgtcggtggaccgaaagcagtaaagaagaaggcg
aggtcctctgacaatgctttctttgagcctgaacccaagcggagccggagaggcggcggc
ctcgacgacgacatcgagagcttagagagcgacgaggagatgagcgaacaggatagcgaa
gacgaggaagaggagacagccggcgagaagaggattagggtcgcgagggagcacctaaac
aaggtccgagctatcgcgatgagggtgcatgaggacgaaggggaagaggaggaaggtgac
gagggaagatatgagagggagggtaaaagagattccttggtggccgagctccttcaaaag
gagcagcttgaagggagtggtcgcctacaaagagtcattgcaactagggttctaagacca
gaacctgatgacaaatttcgaatgctagtgaagcatcatctgtctgttactgctgttgct
ttagctgaaggcgattcaaaggggttttcagcttctaaagatggagttattatgcattgg
gatgttgagactggtaagtctgagaaatatttgtggccttctgaagatgtattgctatca
catcaagcaaagccaccacaaaattcagctaagaaaaggagtaagaatgtcctagctctg
gctattagttctgatgggcggctgttggcaagtggggggttggaccgccatatccattta
tgggatacccgcactcggggacatgtcaaggcatttcatggtcacagaggacctgtttca
tgtcttacctttagagaagggactccacagcttttttctgggtccttcgatagaacaatt
aagttatggaatgctgaagataaaactcacatggacaacttatttggccaccagagtgat
atactggcaattgactgcctgcgaagagagcgacttttaactgtagggcgtgatcgtacc
atgcgattgtggaaggtacctgaggaatcacagttggtctttcgggcccctgcgtcatct
ttggaatgttgctgtttcataaacgatagtgagttcttatctggctctgatgatggtagc
attgagctctggagtttaaagcgcaagaagcctacacacctaataaaaaatgcacatgct
ccatctctgttgaactacagtcattcatatgaagagaatgggacaactacttgtaatggc
ggcgatatagacaatgggtgcaaaaaaaaagaaagtcattcttcagctcactcgtggatt
agttcagttgctgtatgtagaggtagtgatcttgctgcttctggagccgcgaatggagtt
gttcgcttgtggtcaattcaaagtgagagcagtggtattaggccattatatgattcttct
ctggctggattcgtcaattcacttgtatttgctaaatctgcacgcttccttgtcgccggt
gttggtcaggaacctcgtctcgggagatggggtcgcgtctcatcggcacgaaatggagtt
gccatacaccccatcaagttgaaagacgagcatttatcgatcgcctga
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