Zingiber officinale (ginger): 121976456
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Entry
121976456 CDS
T08725
Name
(RefSeq) exosome complex component RRP43-like
KO
K12586
exosome complex component RRP43
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121976456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121976456
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121976456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
121976456
NCBI-ProteinID:
XP_042384560
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All DBs
Position
1B:complement(122899880..122904353)
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AA seq
313 aa
AA seq
DB search
MAAATSTAFGGGETGGGGLAAGEMEVEAYRRLFPLAFYERHLRDSVRPDARPLHRARDTS
IALGPVASADGSALVKIGDTTMLAAIKLEVMTPATDAPDEGSLAIEFYMPPICSPTVRPG
RPAEVAPVISKQLSDTIISSQMINLKELSLVSGKASWMSYLDIYCLNADGALFDAALLSA
IAAFSHLQIPLVSLNDDGKVITVSEELLEGKPSVELVNKEKRKLPLQRIPFSLTCLLHEK
YILADPTAEEESVMETFVTVVLDSLGQLVSIYKPGGAVLARRSTVKECIRLTKQRIDELK
NILDESASAMEVA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcgacgtcaacggcttttggcggcggcgagactggcggcggcggtctggcg
gcaggggagatggaggtggaagcttaccgccgcctcttcccccttgctttctacgagcgc
cacctccgcgattccgtccgccccgacgcccgtcccctccatcgcgccagggatacttcc
atcgcccttggccctgttgcttctgccgatggttccgccttggttaagattggcgatacg
acgatgctggcagctatcaaacttgaagttatgaccccagctactgacgcgcctgatgaa
ggctccttagctattgagttctacatgcctccgatatgttcaccgactgttaggcctggg
aggcctgctgaggtagcacctgttatttcaaaacagttatcagatactataattagttct
cagatgataaacttaaaagaactatctttggttagtggcaaagcttcatggatgtcctat
ctggacatttattgtctcaatgctgatggtgctctttttgatgctgcattactctcagca
attgctgcattttctcacttgcaaatccctcttgtttctctcaatgatgatggcaaagta
attactgtttctgaggagctacttgaaggaaaaccatcggttgagttggttaataaagaa
aagagaaagcttccgcttcaaaggatcccgttttctttgacatgcttgctccatgaaaag
tacatcttggcggacccaactgcagaggaagagtccgttatggaaacttttgtaactgta
gtacttgattcattagggcaactggtgtcaatctataaacctggtggggcagtcctcgct
cgcagatcgactgttaaggagtgcatccgtctcacaaagcaaagaatcgacgagcttaag
aatatattagatgaatcagcatccgcaatggaagtggcctag
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