Zingiber officinale (ginger): 121976480
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Entry
121976480 CDS
T08725
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121976480
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121976480
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
121976480
NCBI-ProteinID:
XP_042384588
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Position
4B:125255001..125260318
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AA seq
456 aa
AA seq
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MKVATVMESLRWPRLLALGFLVLVAWFGVDQIAASRGGMAATEAAFTRRNLREIVVANQS
SKTVESVGRDVVMGAVDDPELVAAEVHRMINDSTARRELGYLSCGTGNPIDDCWRCDPEW
HFHRKRLADCGIGFGRNAIGGRNGRFYVVTDPRDDDPINPRPGTLRHAVIQDEPLWIVFK
RDMVITLSQELIMNSFKTIDGRGTNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMV
RSSPSHYGWRTMADGDGVSIFGASHIWVDHNSLSNCADGLIDAIMGSTAITISNNHLTHH
NEVMLLGHSDSYVRDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGG
SADPTINSQGNRYLAPANPFAKEVTKRVETGTNVWKNWNWRSEGDLLLNGAYFTPSGAGA
SASYAKASSLGAKSSSMVGSITSGAGALRCLRRFHC
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggcgacggtgatggaatcactgaggtggcctcgcttgctggctctcggtttt
ttagttctcgtcgcgtggtttggagtcgatcagatcgctgcctcgaggggagggatggcg
gcgacggaggctgccttcacgaggaggaacttgcgagaaatcgtagtagctaaccagtct
tccaaaacagtggagagtgttgggcgagatgtggtaatgggcgcggtcgacgatccggaa
ttggtcgcagcagaggtgcacaggatgatcaacgacagcacggctcgtcgggagctgggc
tacttgtcatgcgggacagggaaccccatcgacgactgctggcgttgcgacccggagtgg
cacttccaccgcaagcgcctcgctgactgcggcattggctttggccgtaacgccatcggc
ggccgcaatggccgcttctacgtggtgaccgaccccagggacgacgaccccatcaacccc
cgcccaggcaccctccgccacgccgtcatccaggacgagccgctctggatcgtcttcaag
cgcgacatggtcatcaccctctctcaggagctcatcatgaacagtttcaagactatcgac
ggccgtggcaccaacgtccacatcgccaatggcgcttgcatcaccattcagttcgtcacc
aatattatcatccacggcctccatatccacgactgcaagcccaccggcaacgccatggtc
cgcagctccccttctcactacggatggcgcaccatggccgacggtgacggcgtctccatc
ttcggtgccagccacatctgggtcgaccacaactccctctccaactgcgccgacggcctc
attgacgccatcatgggatccaccgctatcaccatctccaacaaccatttaacccaccat
aacgaggtgatgctattgggccacagcgattcttatgtcagggacaaggccatgcaagta
accattgccttcaatcacttcggagaaggcctcatccaaagaatgcccagatgcaggcat
ggctattttcacgtagtgaacaatgactacactcactgggagatgtatgccatcggagga
agtgccgatcccaccatcaacagccaaggcaacagataccttgctccggcaaacccattc
gccaaggaggtgactaagagagtggaaaccggtacaaatgtgtggaagaattggaactgg
agatcagagggcgacctcctattaaacggcgcctacttcaccccttccggtgcaggtgcc
tcggctagttatgccaaggcctccagtctgggggccaagtcttcctccatggtcggctcc
atcacctccggtgcaggtgctctgcgctgccttcggcgtttccactgctga
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