Zingiber officinale (ginger): 121976578
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Entry
121976578 CDS
T08725
Name
(RefSeq) protein transport protein SEC16A homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121976578
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
121976578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
121976578
NCBI-ProteinID:
XP_042384723
LinkDB
All DBs
Position
4B:127314132..127325865
Genome browser
AA seq
1425 aa
AA seq
DB search
MASSSPSHVVDQTDDDHDFFNNLVDGDFGGNGSHIRSKEIARDLSNLSLDDTGTFVDDPD
DAGLISESNGPQKSETLQLAGYPEDYLASHDSPTVNYSPDKVATSESSSASILETAMQST
SPTNNAGSRGTCIKQVQWSAFSLGTQQSDNVGLETSSDFFVENVNPSDKLNSNADFNFLH
VENQVKNVDTHTNSQNNQESQLFSSVIDQNTGGVDAQYWERLYPGWKYDSITGQWYQLDG
YNENVITQDNYTSGVVSQGNFNDNAEAAANLGSSEDLYLQQISQSALETIAEESTSANTA
TTYNWNIVYQENMEFPPNMVFDPQYPGWYYDTNTQQWYTLESYTQTTKIPNVVQNEAIAS
AGFSEGSYSVYDEVGRPDQRTDISLGSQEFWHGADLSSSYSHQQNMLQAKQISENRFSHN
QQMQSFYKPSTATITRADNDTALQTFKPMVNHGFGLTNGAIMQYNSANEESTHPVYLQNL
PHSMQQSISNSFLGNHNSVDFRQPSFQDTKDSYSMFSHAPDEGRSSAGRPAHALVSFGFG
GKLVVTKNSNSSRTNLDYGIQEYPAGAISILNLSEVVKNELDASNFVSGTVLDYFHSLYK
QKFPGPLVGGSASTKDINKWLDERILSYDGPVMEFHKGKFLKLLLSLLRISLQHYGKLRS
PFGSDLSLEDLNGPEEAVCKLFASSKISSPFGGYGSYAHCLNNIPPESQLQATAARVQSL
LVSGKRKEALQSAQVGQLWGLALVLAAQLGDKFYVDTVKKMAQHQFAFGSPLRSLCLLIA
GQPADVFSADNAVNFLSMALPIQSAEVKSSGMLDEWQENLAIVTANRTKDDELVIIHLGD
CLWKDKGEVTAAHTCYLVAEANIEPYSDSARLCLIGADHLKYPRTYASADAIQRTELYEY
SKVQGNSQFILLPFQPYKIIYAHMLAEVGKIPDSLKYCQSASKLLKSSARTSELEIWKSV
LSSLEDRLRIHQQGGYGSSLAPGNLVGKLFTTFDRSIHRMIGAPAAPLPPLPPGNVNDKE
TSYSVAPKVSNSQSTMAMETSYSLVPSASVETMTEWSSNNTSKIRHNRSVSEPVFGQIPK
QDSSSDGAQSKATSGGSRFGRIGSQLLQKTMGWVSRSHQQAKLGERNKFYYDEKLKRWVE
EGADPPAEEAALPPPPTAKSFQNGMLDYKISNTFKSESIIDDTFKPVSVGDKEGPAAEPL
APSKQKSAIPPIPPSQNQFSAHGKVGIRSRYVDTFNKGSGGGGPFTKPFQSPALPSTKPL
VSTKFFMPASPPSNEERPTDTASESNQDSTSTTGEDPPVTREASFSPPASSSIPSTGEDP
PESATRAASFSPPASSSIPRFLSSSSIAHLGNTDSGAASSLAISRATSWSGNYELLNQTT
TGRRPWQGPTMFSPTRSMPASPIGSSSTLQQNDASLSDDLQQIEL
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttcctctccttctcatgtggtagatcagactgacgacgaccatgatttcttc
aataatctagtggatggagattttggtgggaatggatctcatattcgttccaaagaaatc
gcgagagatttatctaacctcagtcttgatgatactggtacgtttgtggatgatcctgat
gatgctggattaatttcagaatcaaatggtccacaaaaaagtgaaacattgcagcttgca
ggttatccagaagattatttggcttctcatgatagtcccactgtgaattattcaccagac
aaggtagccacatcagaaagttcttctgcgagcattcttgagactgcaatgcaaagcaca
tcgccaactaataatgctggatctaggggaacgtgtataaagcaggttcagtggagtgcc
ttcagtcttggcacacaacagtctgacaatgttgggttggaaacttcttcagatttcttt
gttgagaatgtcaatccatctgacaaattgaattcaaatgctgattttaattttctccat
gtggaaaatcaagttaaaaacgtggacacacacacaaattcccagaataatcaagagtca
cagcttttcagttcagttattgatcagaacacaggtggtgtagatgcacaatactgggag
agactttaccctggttggaagtatgattcaatcactgggcaatggtatcagttggatggc
tataatgaaaacgtaattacacaagataactatacttcaggagtagtttcacagggaaat
tttaatgacaatgcagaagctgctgctaacttgggtagttcagaagatctatatcttcag
cagatttcgcagtcagccctggagaccatagctgaagaaagtacatcagctaatactgct
acaacttacaattggaacattgtttatcaggagaacatggaatttcctcctaatatggtc
tttgatcctcagtatccagggtggtattatgataccaacacccaacagtggtataccctg
gagtcatacactcagactacaaaaataccaaatgtagttcagaatgaggctattgcttca
gctggcttctcagaagggagctatagtgtatatgatgaagttggtcgacctgatcaaagg
actgatatatccctagggagccaagagttttggcacggggctgatctatcaagcagctac
tctcatcagcagaacatgctgcaggcgaaacaaattagtgaaaatagattttctcataac
cagcagatgcagagcttttataaaccaagcactgctacaataactcgtgcagataatgac
acggctcttcagacattcaaaccaatggtgaatcatggttttggcttgaccaatggggca
attatgcaatacaactctgccaatgaagaaagtacacatccagtttatcttcaaaatctg
ccacatagtatgcaacaaagtatatccaacagctttttaggcaatcataactcagttgac
tttcgacagccttcatttcaagatacaaaggattcttattccatgttttctcatgctcct
gatgaaggcagatcatcagctgggcgtcctgcacatgctttggtttcttttgggtttggt
gggaagcttgtagttactaaaaatagcaactcttctcgaacaaatttagactatggaatt
caggaatatcctgctggtgcaatctctattcttaacttatctgaggttgtgaagaatgaa
cttgatgcgtccaattttgtttctggcaccgtgttggattacttccattctttgtacaag
caaaaatttcccggtccccttgttggagggagtgcttctacaaaggatataaataaatgg
ttagatgagagaatcttgagctatgatggtcctgttatggaattccacaaagggaaattt
ttgaagttgcttctttcattgctccgaatatcattgcagcattatggcaaacttcgatct
ccttttggatctgatctatcactagaggatttaaatggtccagaagaggcagtatgtaaa
ctttttgcttcctctaaaattagtagtccttttggaggttatggttcctatgctcattgt
ttgaataatattccaccagaaagtcaacttcaggcaactgccgctagggtacaaagcctt
cttgtttctggtaaaaggaaggaggctctccaatctgcacaagtaggtcagttgtggggc
cttgctcttgttcttgctgcacagcttggagacaagttttatgttgacacagtgaagaag
atggcacaacatcaatttgcatttggttcacctttacgatcactatgtcttcttattgct
gggcagcctgcagatgtattttctgcagacaacgcagttaatttcttatctatggcttta
cctatacagtcggcagaggttaaatccagtggtatgttggatgagtggcaagaaaattta
gcaattgtaactgcaaacagaacaaaagatgatgaattggtaattattcatcttggggat
tgtctgtggaaagacaaaggagaggtaactgctgctcacacttgttacttggttgctgaa
gcaaatattgaaccatattcggacagtgcaagactctgtcttattggtgcagatcacttg
aagtatccaaggacatatgcttcagctgatgctattcagcgaacagaactttatgaatat
tcaaaggtgcaaggaaattcccagtttatcctactacctttccagccatacaagataatt
tatgcccacatgctcgctgaagttgggaagatccctgattcattgaagtactgtcaatct
gcttcaaaattgctgaagagttctgctcgtacttccgagcttgaaatttggaagtcagtg
ttatcctctttagaggatagactgcgtattcaccaacagggtggttatggttcaagcttg
gctcctgggaatctagttggaaagttgtttaccacctttgatagatctattcatcgcatg
attggtgcaccagcagcacctcttccaccattgccaccggggaatgtaaatgataaagaa
acatcatattcagttgcccctaaagtatcaaatagccagtcaacaatggctatggaaaca
tcatattctttagttccatcagcatcagtggagaccatgactgaatggtcaagtaataat
actagtaaaattaggcataatagaagtgtttcagaacctgtgtttggacaaatcccaaaa
caggattcgagctcagacggtgcacagagcaaggcaacatctggtggctcgcgctttgga
cgcattggctcacaacttctacagaaaaccatgggatgggtgtcgagatcacatcaacag
gcaaaactgggcgaaaggaacaagttctattacgatgaaaagcttaagagatgggtggag
gaaggagctgatcctccggcagaggaagctgcccttcccccacctccaacagcaaaatca
ttccagaatggtatgctggattacaagatcagtaatactttcaagagtgaaagcatcatc
gatgatactttcaagccagtaagtgttggcgataaggaaggaccagcagctgaacctttg
gctccatcgaaacagaaatctgcaataccaccaattccacccagccaaaatcagttctca
gcacacggcaaagtgggcattcggtccagatatgtggatacattcaacaagggcagcggc
ggcggtggccccttcacaaaacctttccagtcacctgcacttccgtcaacaaaaccattg
gtcagcacaaagtttttcatgcccgcctcaccaccatccaacgaggaaaggccgactgat
acagcaagcgaaagcaaccaagattccactagtaccactggcgaagatccacctgtgaca
agagaagcatccttttccccaccagcttcatcctccattccttccactggcgaagatcca
cctgaatctgcaacgagagcagcatccttttccccaccagcttcatcctccattccccgg
ttcctgagctcgagcagcattgcacatcttgggaacacagactctggagctgcttcttcc
ttggccatatcgagagccacatcctggagtgggaattatgagctactcaatcaaactaca
acaggcaggaggccatggcagggtcctacaatgttctcacccactcgcagtatgccagcc
agcccaattggcagctcatcaaccttgcagcagaatgatgcttctctctcggacgaccta
caacagattgaactctga
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integrated database retrieval system
