Zingiber officinale (ginger): 121976603
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Entry
121976603 CDS
T08725
Name
(RefSeq) putative pectate lyase 17
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121976603
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121976603
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF2917
Motif
Other DBs
NCBI-GeneID:
121976603
NCBI-ProteinID:
XP_042384768
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Position
4B:127686867..127688430
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AA seq
330 aa
AA seq
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MCSVGFAGKMTMNRGRGVSRYVVTDSSDDPVRPRPGTLRYGATVLQGKVWITFARDMQIR
LVRPLVVKSFTAIDGRGADVHIANGAGFLLYKVQNVIIHGLQFHHLQSQAPGPIIDPHGE
LSHSGNEDGDAIRVVTASKVWIDHNTLYSCEDGLIDVTRGSTDITISNNWFHNHDKVMLL
GHRDGYIRDKAMRVTVAFNRFGPNCNQRMPRVRYGYAHVVNNLYDGWKEYAIGGSVGPTI
MSEGNLFVASKQKEVTRRMPASEGKPLARSWNLRSEHDAFENGAFFSKSGSRVASPRYDA
QQRFTAASPGAVRALTRNAGALRCSKKARC
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgtgctcggtgggcttcgccggcaagatgaccatgaacagagggcgcggcgtgagcagg
tacgtggtcacggactctagcgacgaccccgtgcggcctcgcccagggacgctgcgctac
ggcgcgacggtgctccagggcaaggtgtggatcacgttcgcgcgagacatgcagatccgc
ctcgtgcgcccgctcgtcgtcaagagcttcaccgccatcgacggccgcggcgccgacgtc
cacatcgccaacggcgccggtttcttgctttataaggtgcagaacgtaattatccacggg
ctgcagttccaccacctgcagtcgcaggcgccggggccgatcatcgacccgcacggggag
ctatcgcactccggcaacgaggacggcgatgccatcagggtggtgacggcctccaaggtg
tggatcgaccacaacacactgtactcgtgcgaggacggcctcatcgacgtcacccgcggc
tccaccgacatcaccatctccaacaactggttccacaaccacgacaaggtcatgctcctc
ggccacagagacggctacatccgtgacaaggccatgcgcgtcaccgtcgccttcaaccgc
ttcggccccaactgcaaccaacgcatgcccagggtgaggtacggatacgcgcacgtggtg
aacaacttatacgacggatggaaagagtacgccatcgggggaagcgtcgggccgaccatc
atgagcgaagggaacctgttcgtggcgtcgaagcagaaggaggtgacgaggcggatgccg
gccagcgaaggcaaaccgctggccaggtcgtggaatttgcgttccgagcacgacgccttc
gagaacggggccttcttcagtaagtcgggatcccgcgtggcgagtccccggtacgatgcg
caacagaggtttacggcggcgagccctggtgcagtgagggcgctgacgaggaacgccggc
gcactacgctgcagcaagaaggctcgatgttag
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