Zingiber officinale (ginger): 121976882
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Entry
121976882 CDS
T08725
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121976882
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121976882
Spliceosome [BR:
zof03041
]
Complex C
Other components
Complex C specific factors
121976882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
AAA_30
AAA_19
HA2_N
Il13Ra_Ig
ResIII
AAA_7
nSTAND3
Cas3-like_C_2
AAA_23
AAA_11
SRP54
AAA_29
T2SSE
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
121976882
NCBI-ProteinID:
XP_042385211
LinkDB
All DBs
Position
4B:complement(134644112..134686545)
Genome browser
AA seq
699 aa
AA seq
DB search
MAQFWRPGSARPRASLIDDEEGGVLFLSSPAPSSSSGFGYSSLERQRQRLPVFKYRDAIL
YLVENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVASRVAEEM
GVKIGEEVGYTIRFEDQTNPGVTMIKFLTDGVLIREMMDDPLLTKYSVIMVDEAHERSIS
TDMLLGLLKKIQRRRPELRLIISSATIEAKSMSNFFQNRKKVLEHFAMDSVPNQLPAIVS
VEGKGYTVDIYYVEEPVSDYLQTTVDTVLLINEKESPGDILVFLTGQDDIDAAVKLLTDA
THDDKKRSSGLLILPLFSGLSRVDQDLVFAPTPRGKRKVVISTNIAETSLTLEGVVYVVD
SGFSKQRFYNPVSDIESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEDYFLKEMAADG
IPEMQRSNLVSCVIQLKALGIDNILGFDWLASPPPEAMVRALEVLYSLSIVDDDVKLTSP
IGYQIAEVPMDPMVSKMVLSACDLGCSEEMTTIAASLSVQSIWVSGRGAQKASDEVKLRF
AAAEGDHITFLNVYKGFINSGKSSQWCYKNYVNYHAMKKVVDVKEQLCRLLRRFGLALKS
CEQDTQILRKAIIAGFFANSCYMEEYSHNGLYKTIRSSQEVYIHPSSVLFRVNPKWVVYH
SLVSTDKHYMRNVIAIDPSWLIEAAPHFYQTRSPNLALY
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctggcgacccggttcggcgcggccccgagcaagcctcatcgacgacgaa
gagggcggtgttctcttcctctcttctccggctccctcctcgtcgtccgggttcgggtat
tcgagcttggaacggcagcggcagagactgcccgtgttcaagtaccgcgatgccattctt
tacttggtggagaatcacgccaccaccatcatcgtcggcgagaccgggagcgggaagact
actcagattccccagtatcttaaagaggcaggctgggctgaaggtggtcgagtaattgct
tgcactcaacctagacgattggctgtgcagtcagttgcatcacgagttgctgaagagatg
ggtgtcaaaattggagaagaggttggatataccattcggtttgaagaccagacaaatcct
ggtgtgactatgataaagtttctcactgatggggtactgattagagaaatgatggatgat
ccactattaactaagtatagtgtcatcatggtagatgaagctcatgagagatctatatca
actgatatgttattaggcctcttgaaaaagatccaacgacggcgacctgaattgcgccta
atcatatcatctgcaacaattgaagcgaagtccatgtccaactttttccaaaatagaaag
aaggttcttgagcattttgccatggatagtgtccctaatcagcttcctgccattgtttct
gttgagggtaaagggtatacagtggacatttattatgttgaagagccggtgtctgactat
ttgcaaactactgttgatactgtcttgttaatcaatgaaaaggagtcgcctggagatatt
ctggttttccttacaggtcaagatgacattgatgccgctgtaaagttattgactgatgct
acccatgatgataaaaaacgctcatcagggttgttgattttgccactattttcggggctt
tcacgtgttgaccaggaccttgtttttgctcctactccgagggggaaaaggaaagttgtt
atatcaactaatattgcagagacttcattgactctagagggtgttgtatacgttgtggat
agtggattctctaagcaacgattttacaatccggtttctgacattgagagcttggtggtg
gcaccaatatctaaagcttctgcacggcagagagcaggtcgagctggaagagtacgacct
ggaaaatgctttaggctatatacagaagattactttttgaaggaaatggctgcggatgga
attccagaaatgcaaaggtcaaacctagtctcttgtgtgatacagttaaaggcattgggc
atagataatatattgggctttgattggctagcttctccaccaccagaggccatggtgcgg
gctcttgaagttttatactctctcagtattgttgatgatgatgtcaaactcacatcacca
attggttatcagatagctgaggttccaatggatcctatggtatccaaaatggtattatca
gcatgtgacttgggttgttctgaggagatgacaactatagctgcttctctttctgttcag
tccatttgggtttctgggaggggagcgcagaaagcatctgacgaagtgaagctacgtttt
gctgctgcagagggagatcatattacatttcttaatgtctataaaggattcattaactca
ggaaaatcatcacagtggtgttacaaaaactatgttaactaccacgctatgaagaaggtt
gtggatgtcaaggaacaactctgccgcttgttgagacgatttggtttagcgctcaaatca
tgcgagcaagatacacagattctaagaaaagccataattgccgggttctttgcaaattca
tgctacatggaggaatacagccacaatggattgtacaagacaattagaagttctcaagaa
gtatacattcatccttcctctgtactgttcagggttaaccctaagtgggtggtctatcat
tcccttgtgtcaaccgacaagcattatatgcgcaatgttattgcaattgatccatcctgg
cttattgaagctgcaccacatttctaccagacgcgttcaccaaaccttgccctttactga
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