Zingiber officinale (ginger): 121976956
Help
Entry
121976956 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase ATL42-like
KO
K10664
E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121976956
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121976956
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
121976956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_4
Tmpp129
Prok-RING_1
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
121976956
NCBI-ProteinID:
XP_042385332
LinkDB
All DBs
Position
1B:complement(124219090..124223928)
Genome browser
AA seq
430 aa
AA seq
DB search
MQQRLKTSVNLMLNLMLIAFLLFFLAPSAVVAADSPSQEADVSFRPGFTVVFGIFATMFA
LILLMLFCAKFCHRGLLTLEPSLAADDRSILPLLQPSGIEKVAVDSLPFFRFDSLRGGRA
GLECAVCLSRFDDADVLRLLPKCKHAFHIACVDRWIEAHSTCPLCRAGVCAEDAALFRGL
SASCRFLFASDRLDDVTAATELELFVERQPFGSSRFSIGSNFRRTGKKGMEKDGIRAEEE
GDNAAQHFHKYKHRIIVSDVMSRGRWSDVNSSDLLSLSADMLSIASSKRFSEEDFNLEHD
GAEIHRDDNGGDKISATDEKILTIKREMEKKRLLELKVRQIKGSKSMVLSGFVADVNSRA
SISCRARSMSEITNLSRFEMGRDAARSSTSAGDKDEKFRRIWLSIARRTVKWFAGRERRS
QSSTEESTSA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcgtctcaaaacgagtgttaatctgatgttaaatctgatgttaatcgccttc
ctcctcttctttcttgcgccctccgccgtcgtcgccgctgactcgccgtcgcaggaggcc
gacgtctccttccggccgggcttcacggtcgtgttcggcatcttcgccaccatgttcgct
ctcatactcctcatgcttttctgcgctaagttttgccaccgcgggcttctcactctcgaa
ccctccctcgccgccgacgaccgatcgattctgcccctcctccagccttccggaatcgaa
aaggttgccgttgattccctccctttctttcgattcgattcgctccgcggcggccgcgcc
ggcctcgagtgcgccgtctgcctctccaggtttgacgacgccgatgtcctccgccttctc
cccaagtgcaagcatgcctttcacatcgcctgtgtcgaccgatggatcgaggcgcactcc
acttgccccctctgccgcgctggagtctgcgccgaggacgccgccctcttcagggggctc
tccgccagctgccgcttcttgttcgcctccgaccgcctcgacgacgtcaccgcggctacc
gaacttgagctcttcgtagaaaggcagccctttggctcctcaagattcagcatcgggagc
aatttccggaggacgggcaagaaaggcatggagaaggatggaattagggcagaagaagaa
ggggataacgcagctcaacactttcataaatacaagcacagaattatagtctccgatgtc
atgtccagaggccggtggagtgacgtcaactcgtcggatttgctttctttgagcgcagat
atgctcagcattgcttcgagcaaaagatttagcgaggaagatttcaacttggagcatgat
ggagctgaaattcatcgagatgacaatggaggagacaaaatttccgcaactgatgagaag
atattgacgattaagagagagatggagaagaagagactgctagaactcaaagtcaggcaa
atcaaagggagcaaatcaatggttctttccggatttgttgctgatgtgaactcaagagct
tcgatatcctgcagggcgagatcgatgtcagaaatcactaatctgtcaagatttgagatg
ggcagagatgcagccaggagcagcacatcggcaggggacaaagatgagaaatttaggagg
atttggctgtctattgcaaggaggacagtgaagtggtttgcagggagagaaaggagatca
cagagtagcacagaggagtcaacaagtgcctga
DBGET
integrated database retrieval system
