Zingiber officinale (ginger): 121977096
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Entry
121977096 CDS
T08725
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04142
Lysosome
zof04144
Endocytosis
zof05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121977096
04142 Lysosome
121977096
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121977096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121977096
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121977096
Membrane trafficking [BR:
zof04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
121977096
Exosome [BR:
zof04147
]
Exosomal proteins
Proteins found in most exosomes
121977096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
121977096
NCBI-ProteinID:
XP_042385548
LinkDB
All DBs
Position
1B:124952560..125001997
Genome browser
AA seq
1705 aa
AA seq
DB search
MAAANAPIVMQEVLTLPSIGINPQFITFTHVTMESDKYICVRETSPQNSVVIVDMNMPMQ
PLRRPITADSALMNPNSRILALKAQIPGTTQDHLQVFNIEAKTKIKSHQMPEQVVFWKWI
TPKMLGVVTQTSVYHWSIEGESEPVKMFDRAANLTNNQIINYRCDPSEKWLVLIGIAPGA
PERPQLVKGNMQLFSVDQQRSQALEAHAASFASFKVVGNENPSILISFASKTSNAGQITS
KLHVIELGAQPGKPGFTKKQADLFFPPDFADDFPVAMQISQKYNLTYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASNIGGFYAVNRRGQVLRATVNEATIIPFISGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFSQTKYKEAAELAAESPQGILRTPETVAKFQSVPVQ
PGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAEKREFDKILIYSKQVGYTPDYLFLLQTILRTDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLE
INLVTYPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYSELPDIRRVIVNTHAI
EPQPLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYSEQLGADACIKLFEQFK
SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQLKEVERVTRESNFYDPEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVAECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELIDVTNKNSLFKLQARY
VVERMDADLWEKVLQPENEYRRQLIDQVVSTALPESKSPEQVSSAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPPRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIQSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE
SFIRADDETQFHDVIQAAQNANAYHDLVKYLLMVRQKLKEPKVDGELIFAYAKIDRLGDI
EEFILMPNVANLQNVGDRLFDDALYEAAKIIFAFISNWAKLASTLVKLKQFQGAVDAARK
ANSSKTWKEVCFACVDAEEFRLAQICALNIIIQVDDLEEVSEYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRVCDEQHHWKELTYLYI
QYDEFDNAATTIMNHSPDAWDHMQFKDVIVKVANVELYYKAVHFYLQEHSDLINDVLHVL
ALRVDHTRVVDIMRKAGHLHLVKPYMVAVQSNNVAAVNEALNEIYVEEEDYDRLRESVDL
HDNFDQIGLAQRIEKHELLEMRRIAAYIYKKAGRWKQSIALSKKDKLYKDAMETCSQSGD
RELSEDLLVYFIEQGKKECFASSLFICYDLIRPDVALELAWMNNMIDFAFPYLLQFIREY
TSKVDELIKHKIEAQNEEKTKEKEEKDLVAQQNMYAQLLPLALPAPPGMGGPAMGGAYGP
PPVPPMGAMGMPPMPPFGMPAMGSY
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagccaacgcacccatcgtgatgcaggaggtcttgacgcttccgagcatcggg
atcaatcctcaattcatcacgttcacgcatgtcacaatggaatcggataagtacatatgc
gtaagggagacctctccgcagaatagtgttgtaattgttgacatgaacatgccgatgcag
cctttgaggaggccgatcactgcagactctgctctgatgaatcccaacagcaggattctt
gctctcaaagctcaaatccctggaaccactcaggatcacttgcaggtgttcaacatcgag
gcaaagactaaaatcaaatctcatcagatgcctgaacaggttgtattttggaagtggatc
accccaaagatgctgggtgtggttactcaaacttctgtctatcattggtcaatagaaggt
gaatcggagcctgttaagatgtttgatagggcagctaatttgacaaacaatcagataatt
aactatagatgtgatccatcagagaaatggctagttcttattggaattgcacctggtgct
ccagagagaccacagctggtgaaaggaaatatgcagctcttttctgttgatcaacagcgt
agtcaggctcttgaagcacatgctgcgtcctttgcttcatttaaggtagttgggaatgag
aatccctccattctaatttcttttgcctcaaagactagtaatgctggacaaatcacttca
aagttgcatgtcatcgaacttggagcccaaccaggaaagccaggatttacaaagaaacaa
gcagatcttttcttcccgccagattttgcagatgatttccctgtagcaatgcagatatcc
caaaaatacaatttgacatatgttattacaaagcttggtttattgtttgtttatgatctg
gagactgcaactgcagtttacagaaatcgaatcagcccagatccaatatttctcactgca
gaggcttcaaatattggtggtttttatgcagtcaatagaaggggtcaggtcctacgtgct
actgtaaatgaagcaactattattccatttatcagtggccaattgaacaatttggagctt
gctgttaaccttgcaaaacgcggaaaccttcctggtgcagagaatttggttgtgcaaagg
tttcaagaactattttcccagacgaaatacaaggaagctgctgaacttgctgctgaatct
ccacaaggcattctccgaactccagagactgtcgcgaagtttcagagtgtccctgtccaa
cctgggcagacaccgccactgttgcagtactttggaacgttgttgactagaggaaaactt
aatgcctttgaatctttggagttgtctcgtcttgttgtcaatcagaacaaaaagaacctt
ttggagaattggttggctgaagacaagcttgagtgcagtgaagaacttggggatcttgtc
aagaccgtggacaatgatcttgcactgaaaatttatataaaagcaagggccacaccaaaa
gttgttgctgcttttgctgaaaaacgggaatttgataagatacttatttattcgaagcag
gttggttacacgccagattatcttttcctacttcagacaattctcaggactgaccctcag
ggagctgtaaattttgcccttatgatgtctcaaatggagggaggttgtccagttgattac
aatacaatcacagatctttttcttcagagaaatctgattcgagaggcaacagctttcttg
ctagatgtattgaagccaaatttaccagagcatggttttcttcaaaccaaggttttagag
attaacttggtgacatatccaaacgttgctgatgctatattggctaatgggatgtttagc
cactatgacagacctcggattgctcaactttgtgaaaaagcaggtttatatatccgagca
cttcagcactactcagagttacctgatatcagacgtgtcattgtgaacactcatgccatt
gagccacagccacttgttgagttctttgggactttatccagagagtgggctctagagtgc
atgaaggaccttttactggttaatttgagagggaaccttcagataattgttcagactgcc
aaggagtactctgaacaattaggtgctgatgcttgcataaagttgtttgagcaatttaag
tcatacgaaggactttactttttcttgggatcttatttgagttccagtgaggatcctgat
atacacttcaagtatattgaggcagcagcaaaaactggacagttaaaagaggttgagcgt
gtgacaagagaatccaacttctatgaccctgagaaaaccaagaattttctgatggaagcc
aagcttccagatgcaagacccttgatcaatgtttgtgatcgttttggttttgttccagat
ttgactcactatttatacacaagcaacatgcttcgttacattgaaggttatgttcaaaaa
gtaaacccaggaaatgctcctttagttgttgggcagctgctggacgatgaatgtcctgaa
gatttcatcaaaggcttgattctttctgtccgttctctccttcctgttgaacctcttgtg
gctgagtgtgagaaaaggaatcgtttgcggttgctcacacaatttctggaacatcttgtt
agtgagggaagccaggatgttcatgtccataatgctttggggaaaattattatcgacagc
aacaacaaccctgagcattttcttacaactaacccatactatgattcacgtgttgttggt
aaatattgcgaaaaacgggatcctactcttgcagttgtcgcgtacaggcgaggtcaatgt
gatgatgaactgattgatgtcactaacaaaaactcattgttcaaacttcaagccagatat
gtagtcgaaaggatggatgctgatttatgggagaaagttcttcaacctgaaaatgaatat
agaagacaactcattgatcaagttgtttctactgcattgcctgagagcaagagtccagag
caagtttcttcagctgttaaagctttcatgactgctgatcttccacatgaacttattgaa
ctacttgagaaaattgtactacagaattctgcctttagtggaaacttcaatttgcagaac
ctgctgattttaacagctattaaagcagatccaccaagggttatggattacattaatagg
ttagataattttgatggccctgcagttggagaggtggctgttgaggcacaactttatgag
gaagcctttgccattttcaagaaatttaacttaaatgttcaggctgtcaatgttcttctg
gacaacatccaaagcatagatagagctgtagagtttgccttccgagttgaggaagatgct
gtatggagccaggttgcaaaagctcaattacgggaaggcttagtaagtgatgctattgag
tctttcatccgtgctgacgatgaaacccagttccacgatgtcattcaggctgctcaaaat
gccaatgcttatcatgatcttgtgaagtacttgttgatggttaggcaaaaacttaaagag
ccaaaagtggacggtgaacttatatttgcctatgccaagattgataggctgggagacatt
gaggaatttattctaatgccaaatgttgctaaccttcaaaatgttggggaccgactgttt
gatgatgctctgtatgaagctgcaaagatcatatttgctttcatttccaactgggcgaag
ttggctagtacacttgttaagctgaagcagttccagggtgctgttgatgcagctcgcaaa
gcgaatagctccaagacatggaaggaagtttgttttgcttgtgttgatgctgaggaattc
cgcttggctcaaatatgtgctctgaatataattatccaggtggatgacctggaagaggtc
agtgaatattatcagaacagaggctgcttcaatgagttaatttccctcatggagagtggt
cttggtttggaacgtgcacacatgggcatatttacagaattgggagtcttatatgctaga
tatagaccagaaaaacttatggagcacattaaacttttctcaactcgattaaacattccc
aagcttatacgtgtttgtgatgagcaacaccactggaaagagctaacatatttatatata
cagtatgatgaatttgataatgcagctaccactattatgaaccattctcctgatgcatgg
gatcatatgcagttcaaagatgttattgttaaagttgcaaatgttgagctctattataaa
gctgtgcatttctacttgcaagaacattctgaccttattaatgatgtgttgcatgtgcta
gcacttcgtgtggaccacactcgtgttgtagatattatgcgaaaggctggccacttacat
cttgtgaagccatatatggttgctgttcaaagcaacaatgtggctgctgtcaatgaagct
ctaaacgagatttatgttgaggaggaagactatgacagattacgtgaatcagttgatttg
catgacaactttgatcagatcggccttgcacaaaggattgaaaaacatgaacttcttgag
atgcggagaattgctgcttatatctataagaaagctggaagatggaagcaatccattgca
ctgtccaagaaagacaaactttataaagatgcaatggagacatgttctcagtccggtgac
cgtgaactatcagaagatttgcttgtttattttatcgaacagggaaagaaagaatgcttt
gcttctagcctcttcatttgttatgacttgatccgtcctgatgttgctcttgaacttgcc
tggatgaacaatatgattgattttgctttcccatacctgctacagtttattcgtgagtat
actagtaaagttgatgagctcataaaacataagattgaggcacaaaatgaggagaaaact
aaagaaaaggaagagaaggatttggttgcacagcagaatatgtacgcacaattgctgcct
cttgcattgccagccccgcctggtatgggaggtccagccatgggaggagcttacggaccc
ccaccagttccaccaatgggagctatgggaatgcctcccatgccaccatttggcatgcct
gctatggggagttactga
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integrated database retrieval system
