Zingiber officinale (ginger): 121977171
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Entry
121977171 CDS
T08725
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121977171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121977171
03009 Ribosome biogenesis [BR:
zof03009
]
121977171
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121977171
Spliceosome [BR:
zof03041
]
Complex A
U2 snRNP components
U2 related factors
121977171
Complex B
121977171
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121977171
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
Helicases
121977171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
Helicase_C
AAA_30
Flavi_DEAD
nSTAND3
AAA_11
UvrD-helicase
MeaB
PhoH
Motif
Other DBs
NCBI-GeneID:
121977171
NCBI-ProteinID:
XP_042385669
LinkDB
All DBs
Position
4B:140258224..140261543
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AA seq
662 aa
AA seq
DB search
MADEEATEVNPATGSPFSRRYHKLLQRRKNLPVWADRTKFLDALAKNQVVIVAAPPGSGK
STQIPQFVIEAGYARKGKKVVCAQPRRLVASALSRRVAQEMDVKLGEEVGYSVLFEDCSG
PKTTLKYLTDGVLLREAMYDRMLQSYRVVILDEVHLRTLATDILLAYFKDLFKSKSRSDL
KLVLMSTQDELKKLKDYFKGSRIVQPLPSLHPLEIIHSQDPVRDYVDEAVEIVSQIIVSE
PTGDIIVFLTGKEELERCCWKIEKLIMDLGDRIGPVKVIALDSSMPVDMQKKVFKAAPPA
TKKLSPPIDGVIQHPPSLVGRKVIVSTEIAESSLSIDGIVYSIDCGYTKKKVYNADRHVE
SLLILPISKASAQRRAGCARRSAGGKCFRLYSKTFLGRNQPQDSPEILRANLAGSILQLR
KLGFQDLLKLDLMDPPPAETVLQAVDTLKCLGALDDEGSVTKLGELMSEFPLDPQMAKML
IESPKFCCSNEILSIAAMLSVSNCFLRPIECQEAADKAKATFMHMNGDHLSLLNVYSAYK
LNNGNSAWCKSKFISQAVLKAADNVRNQLKLIMDKLNLTQCSPNSNSSNIYNDIGRALLA
GYFMQVAKLDDSDSYVTIKGHHVVDLHPTTCLSSRPAFVIYHDFVFASKNFIRIVTDFPQ
EW
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagaggcgacggaggtgaacccggcgacgggatcgcccttctcccggcgc
tatcacaagctccttcagcggcggaagaatcttcccgtgtgggccgaccggaccaagttc
ctcgacgcgctagccaagaaccaggtcgtcatcgtcgccgccccgccaggatccggaaaa
tccacccagattccacaatttgtcattgaggcaggatatgcaagaaaagggaagaaggtt
gtctgcgctcaacctcgccgtctagtagcatcggccctgtcccgtcgagttgctcaagag
atggacgtgaagttgggagaggaagtggggtactcggtgctttttgaagactgcagtgga
ccaaagaccactttgaagtacttaacagatggtgtgcttctaagagaggcaatgtacgat
cgaatgctacaaagttacagagtggtaattctagatgaggtgcacttgaggaccctagcc
actgatatacttcttgcttacttcaaggatttgttcaaatcaaaatcccgaagcgacctt
aaactcgtgctcatgagtactcaggatgaattgaaaaagttaaaagattacttcaagggt
tcccgaattgtacaaccacttccatcgcttcatcctctagagattattcattcacaggat
ccagtgagggactatgtggacgaagcagtagagattgtttctcagattattgtatctgaa
ccaaccggtgacataattgtgttccttactgggaaggaggagttagagagatgctgctgg
aaaattgaaaagctaatcatggacttgggagacagaattggacctgtcaaggtcatcgct
cttgattcatctatgcctgttgatatgcagaagaaggtcttcaaggcggctccacctgca
acaaaaaaactatcgccgccaatcgatggtgtgatccaacatccaccaagccttgttgga
aggaaagttatagtgtcaacggaaattgcagaatcttcattgtcaattgatggcattgtt
tactctatcgattgtgggtacacgaagaaaaaggtttacaatgcagatcgtcatgtcgag
tccttgctgattttaccaatatcaaaagcaagtgcacaaaggagggcaggatgtgcaaga
aggtcagctggagggaaatgctttcgactttattccaagacttttttggggagaaatcag
cctcaagattccccagagattctccgagcaaaccttgctggttctatccttcagcttaga
aagcttggatttcaggatttactcaaacttgatttgatggaccctcctcctgctgaaaca
gttctgcaagctgttgataccttgaaatgcttaggtgctttggatgatgagggtagtgtg
accaaattgggagagctcatgagtgagtttcctttggatcctcaaatggcaaagatgctc
attgaaagtccaaagttttgctgctctaatgagattctttcgattgctgctatgctgtca
gtatcgaattgcttcctacggcccatcgaatgccaggaggctgctgataaagctaaggca
acgttcatgcatatgaatggcgatcaccttagtcttctcaatgtttacagtgcatacaaa
ttaaacaatggaaattctgcatggtgtaaaagtaagtttatcagtcaggcagtgctcaaa
gctgctgacaatgtcaggaatcaactcaagttgatcatggataagcttaatcttacacag
tgcagcccaaattcgaacagctccaacatttacaatgacattggaagggcattgctagca
ggttatttcatgcaggtcgcgaagctcgatgattcagacagctatgtaacaataaaagga
caccatgtagttgacctccatcctacaacttgtttgtcgtcaaggccagcatttgtcatt
tatcatgactttgtcttcgcaagcaagaatttcattcggatagtcacagattttcctcag
gaatggtga
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