Zingiber officinale (ginger): 121979338
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Entry
121979338 CDS
T08725
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121979338
03036 Chromosome and associated proteins [BR:
zof03036
]
121979338
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121979338
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121979338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
Tex_central_region
S1_RRP5
Tex_YqgF
Tex_N
Motif
Other DBs
NCBI-GeneID:
121979338
NCBI-ProteinID:
XP_042387246
LinkDB
All DBs
Position
5A:complement(4931608..4947651)
Genome browser
AA seq
2121 aa
AA seq
DB search
MKGKAVNSGKRDKFKGKRAVVVDADDGEEEEEVEGQDEYERGGFMADDIKEEETQESDEE
MRSIKRKKNKKKRLLGKNFVLDEDDYELLDENKMSGFCPPKPGNGKFKRLKIGRDNELED
QQKAIGWHSQGGRSAEEKLKISLFGDDDDFADEAGQLEDRNVIGDEDEMAHFIVDEDVDD
AGALVRKLTKEKSHQVLCIASSTSQALEIFGDLDTSVKKRLDDEFEPFVLSENCMTQKDD
IIRERDIPERIQLSEDTTGPPPIDDQNVEEERNWIYDQLTDGRFSPLVGYDQVLKDINKD
NIDNVLRMMHVQKFDIPFISMYRKELCDSLLKDLDDGMQEGDEMKSMKWHKILWTVQSLD
RKWLLLQKRKSALCSYYTKHFEEESQRVDEETKLNLNNRLFDSVVLALNDAKSEREVDDI
DVKFNLCFPPCEDDTYDGQFKRPKRKSLHAVSYNARLWQITNKFGASSETFGSLLSLEKI
SDEVEDNIESPEEVAAKFTCSTFETPKDVLNGARHMAAVEISCEPNVKKHVRNIFMEKAV
VSISPTPEGNLAIDAYHQLGGVKWLRNKPLMEFVDAQWLLVQKGEENKLLHVSIKLPEDV
QMKLLSDASNCYLSKGVSKSAQLWNEQRTMILKDSFLTHILPSIEKEARSLLTAKAKNWL
CVEYGKQLWNKVLVGPFKRKHTDSDLENESEARVLACCWGPGKPATTFVMLDSAGELVDV
LYAGSISVRSQAVTDQQRKRNDCQRLLKFMVNHQPHVICIGATNMACTQLRDDINEIIED
HPKELGQELENISVIFCDETLPCLYENSKLASEQLPGQPGIVKRAVALGRYLQNPLAMVA
TLCGQEKEILSWKFHPLEHFLTSDEKYEVVEQIMVDASNQVGVDINLAASHEWLFAPLQF
IAGLGPRKASVLQKAFLRAGFISNRKEIPMGKILKMKVFINAVGFLRVRQSGVASFSNLN
MDLLDDTRIHPESYELANNLAKDVYRDDALKEANDMDDMLEKVIEHVKKNPHKLEVFDID
EYANNIFDQYGKNKRETLYDIKMELLQGFRDYRAPFKEPSCEEEFAMLSGETDDTIPEGK
IVQVTVRHVQESQVICVFDSGLKGMVSSDDFSDEGFDYEKVHVGDILTCKIKHVNKNRHV
VYLTSKASDLQKGPYIDKRDPYYNEDKISMGSEMEKVRKNKEYANKPFRSRMIVHPCFQN
LTADEAIEYLSHKEPGVSIMRPSSKGPLFLTLTLKVFDGVFAHKEIAEKGKDHKDMTSLL
RLGKILTIDKESFEDLNEVMHRYVDPLVTHLKSMLGFHKFRKGNQKEVDDQLKAEKAANP
MRIVYCFGVSHEHPGTFILSYIRSANPHHEYVGVYPKGFRFRKKDFDSIHHLVAYFQKNI
DKPLLGEGPSVCTLGAEVSTENPTWVSSGDRESTDGRFNSRNTGNQNERGRGRGRGRGRG
RGRGRGRERGSDFGTDGSDNSGYEEMKGDTAGSGWGGCNIDGSNKGGWGGGDGGSGWGGN
TNSGTDGGGSWGSVEGNVSGQGRWVSSGDKNNSTDGVWAGNSSGGNSAGGWGNLGSGGGS
STGGWGNLRTGGDESSGTGSHRGSGDGSWGATDDVGGQGGRGPSGDVGTGGTDAVGAGNR
GSNGFTSGWGNQEAGGGVRNNSGDGHGENWCGGGAATGGDKSVVAGNYRGWSGRGSSTSN
WGEEGSSNNSRGRGRGRNSGRNNSGWGQGGNDITDLGSVGNSNAAGATSGWGSNQHQDNN
RGNDDAGGNWGSAPAATGGGYSDGTGSTGNWGAVGNDSSQGGRGSSNSGWGQVGNDITDP
VLDGSNNTGGTTSGWGRGSNRYGNNSKGSNDHDGDWSSGSAATGADSHRGQSGRGSSTGN
WGAEGNFSSRWDRGRGRGRGWNNSGRGHAGKDSTDSESTGNGNAMGAPGSWSCGINQGRG
SNHRSSNDADLASGSDGSGDKWTGAGSGRSCGGRSWRVGNNGGRRGRGRARDNSDRGSTD
GWDTGGGQGGEDKWGSNGGGDKGSGFADVNDISLSNSGRGGRRGSDGHPSWGDTNAGGHE
GSSCGWVGNNSGVGNGGGWGGGSCQGGNSSDGNDQARSFADGNDDNSAGASGGGWGGNNN
GGSSKGGWGGNSDGGAGSGWN
NT seq
6366 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcaaggcggtgaactctggaaagagagataagttcaaagggaaacgagccgtg
gtggttgatgcggatgatggcgaagaggaagaagaagtagaaggacaggatgagtatgag
cgaggtggatttatggcggatgacataaaagaggaagaaactcaggagagtgatgaagag
atgcgtagtataaaaaggaagaagaataagaagaaaaggcttttggggaagaactttgtt
cttgatgaggatgattatgagttgctcgacgaaaacaagatgagtggtttctgtccaccc
aaaccagggaatggtaaattcaagcgtctaaagattggaagggacaatgaattggaggat
caacagaaagcaattggttggcatagtcaaggtggccgttcagctgaagaaaaacttaag
attagcttgttcggtgatgatgatgattttgctgatgaagccggtcaattagaagatagg
aatgttattggtgatgaagatgaaatggctcattttatcgtggatgaggatgtggatgac
gctggtgcccttgtgagaaagttgacaaaagagaaatcacaccaagtgctttgcattgca
tcatctacttcacaagcgcttgagatatttggtgatcttgacacatctgtgaaaaaaaga
ttggacgatgagtttgaaccttttgttctttcagagaattgtatgacacagaaggatgac
atcatacgagagagagatattccagagagaattcagttgtctgaggatactactgggcca
ccacctatagatgatcagaatgtagaagaggagagaaactggatttatgatcagcttact
gatggcagattctctcctttagttggctatgatcaagtactcaaagatataaataaagac
aatattgataatgtcttaagaatgatgcatgtgcaaaaatttgatattcctttcattagc
atgtatcgcaaggaattatgtgatagcctgttgaaggatcttgatgatggcatgcaggag
ggcgacgaaatgaaaagtatgaagtggcataagatactatggacagttcagtctttggac
agaaagtggttgttgcttcagaagaggaagagtgctctttgttcctattatacaaagcat
tttgaagaggaaagtcaaagagttgatgaagaaactaaactcaatttaaataacagactt
tttgattcagtcgttttggcactgaatgatgcaaaatctgaaagagaggttgatgacatt
gatgtgaagttcaatctgtgttttcctccttgtgaagatgatacatatgatggacaattt
aagaggcctaaacgaaagtcattgcacgctgtttcctataatgctaggctgtggcagatt
actaacaagtttggtgctagttctgaaacatttgggtctctgctttcattagaaaagata
tctgatgaagttgaagataacatagaatctcctgaagaagttgctgcaaagtttacatgt
tctacgtttgaaactccaaaagatgtgcttaatggagccagacatatggcggctgtggag
atttcatgtgagcctaatgttaaaaaacatgtgcgcaatattttcatggagaaggctgtt
gtgtcaataagtcctactcctgaaggaaatcttgcgattgatgcctatcatcaacttggg
ggtgtgaaatggctgcgcaataagcctttaatggagtttgtggatgctcaatggttgctt
gtccaaaagggtgaagaaaataaattgcttcatgtcagcattaaactacctgaagatgtc
caaatgaaattattaagtgatgcttcaaattgttatctgagcaaaggtgtcagtaaatct
gctcagttatggaatgagcagcggacgatgatattgaaagattcatttctcactcatatt
ttgccatcaatagaaaaggaagctcgctcattgttgacagctaaggcaaagaattggctt
tgtgtggaatatggaaagcaattgtggaataaggtcttggttggtcctttcaagaggaag
cacactgatagtgatttggagaatgaatctgaggcaagagttctggcctgttgttgggga
cctggaaagccagcaactacttttgtcatgttagattcagcaggagaactggtggatgtg
ctatatgctggttcaattagtgttcgatcccaggctgttactgatcaacagagaaagagg
aatgactgccaacgactcctgaagttcatggtcaatcaccaaccgcatgttatctgcata
ggagcaacaaacatggcttgcacacagctaagggatgatattaatgaaataattgaggat
catccaaaagaacttggtcaagaattggaaaatatttctgttatcttttgcgatgaaact
ttgccttgtctttatgagaattcaaagcttgcttcagaacaactacctggtcaaccaggc
attgtgaaacgtgctgtggcacttggacgctatctgcaaaaccctttggctatggtggct
actctttgtggacaagaaaaagaaatactgtcatggaaatttcatcccctggaacatttc
cttacttctgatgagaagtatgaggttgttgagcagattatggttgatgcttctaaccaa
gtcggtgtggatataaacctagcagcaagtcatgaatggctttttgctcctttacaattt
attgctggtcttggtccacgaaaagcatctgtcttacaaaaagcatttttgagggctgga
tttatttcgaatcgcaaagagattcctatgggaaagattcttaaaatgaaggttttcatc
aatgctgttgggtttttaagggtaagacagagtggggtggcttcttttagtaacctcaat
atggaccttttggatgacactagaattcatccagagtcgtatgaactggcaaataatttg
gccaaggatgtctatcgcgatgatgctctaaaggaggcaaatgacatggatgatatgctg
gagaaggtgattgagcatgttaaaaaaaatccacacaagcttgaagtgtttgatattgat
gagtatgcaaacaatatatttgaccagtatggaaaaaacaaaagggagacactttatgat
ataaagatggagcttctacaaggatttcgggactatcgggcaccttttaaagaaccaagt
tgtgaggaggagtttgctatgctctctggagaaacagatgataccattccagaagggaaa
attgttcaagtgacagttcgccatgtacaggagagtcaagtcatttgtgtatttgattct
ggtttaaaagggatggtgtcctctgatgacttttcagatgaaggatttgattatgagaag
gtgcatgtaggggatatacttacatgcaagattaagcatgtgaataagaataggcatgtg
gtttacttgacatccaaagctagtgacctgcaaaaaggcccttatattgataagcgagat
ccttattacaatgaagataaaattagtatgggcagtgaaatggagaaggtccggaagaac
aaggaatatgcaaataaacctttcagatcaaggatgattgttcatccctgttttcagaat
ctgacagctgatgaggcgattgagtacctttctcataaagaacctggtgtgagtattatg
cgtcccagttccaaagggccattatttttgacgttgactttgaaagtttttgatggagta
tttgctcacaaagaaatagctgagaaaggaaaagatcacaaagatatgacaagcttactt
cggctggggaagatactaacaattgataaagagtcctttgaagatctcaatgaggtcatg
caccgatatgttgatccactggtaacccacttgaaaagcatgcttgggtttcacaaattc
agaaaagggaatcagaaagaggttgatgatcaactgaaggcagagaaggcagcaaaccca
atgcggatagtgtactgttttggagtttctcatgagcatcctgggacttttattttatcc
tatattagaagtgcaaatccacatcatgagtatgttggggtgtatcccaaaggtttcagg
tttcggaaaaaggattttgatagcattcatcacttagttgcatattttcagaagaacata
gacaagccactacttggtgagggcccatctgtatgtacacttggtgcagaggtatcaaca
gaaaatcctacatgggtatcctctggtgatcgggaatctacagatggaagatttaactct
agaaatactggcaatcaaaatgaacgagggcgaggtcgtggtcgtggtcgtggacgtgga
cgtgggcgtgggcgtggtcgtgaaagaggaagtgattttggtactgatggaagcgacaac
agtggttatgaggaaatgaagggtgatactgcaggttctggctggggtggctgtaacata
gatggctccaacaaaggtggctggggtggcggagatggtggtagtggttggggtggcaac
acgaattcaggtactgatggtggtgggagttggggaagtgtggaaggtaatgtaagtggc
caagggcgatgggttagctcaggagataaaaacaatagtactgatggtgtctgggctggg
aatagcagtggtggcaacagtgctggtggctgggggaatctgggatctggtggtggcagc
agtactggtggctgggggaatctgagaactggtggtgatgagtcttctgggactggcagt
cacaggggcagtggcgatggtagttggggtgcgacggatgatgttggtggccaaggagga
aggggaccttcaggagatgtaggaacgggtggtactgatgctgtcggggctggaaataga
ggcagcaatggcttcacaagtggctggggcaatcaagaagcaggtggtggagttagaaac
aatagcggggatggccatggtgagaattggtgtggtggtggtgccgcaactggtggtgac
aagtcagttgtggctggcaattacagaggttggagcggaagaggcagttctactagtaac
tggggagaagaaggtagtagcaataacagcaggggcagaggcaggggaaggaatagtggt
aggaacaacagtgggtggggacaaggtggaaatgatattactgatcttggctcagttggt
aatagcaatgctgctggtgccacaagtggctggggaagtaaccaacatcaggacaacaat
agaggcaatgatgatgctggtgggaattggggtagtgcgcctgctgctactggtggtggt
tattcagatgggactggcagtactggtaattggggagcagttggtaatgatagtagccag
gggggcagaggtagtagcaacagtgggtggggacaagttggaaatgatattactgatcct
gtcctggatggtagtaacaatactggtggcaccacaagtggctggggaagaggaagtaac
cgatatgggaataacagtaaaggcagcaatgatcatgatggggattggagtagtggttct
gctgcgactggtgctgacagtcacagaggtcagagtggacgaggcagtagcactggcaac
tggggagcagaaggcaattttagtagccgctgggacagaggcagggggaggggcagaggt
tggaacaacagcgggcggggacatgctgggaaggatagtacggattctgaatctactggt
aatggcaatgctatgggtgccccaggttcatggagctgtggaatcaaccaaggcaggggc
agcaaccatagaagcagtaatgatgcagatcttgcaagtggttctgatggtagcggcgac
aaatggactggggctggcagtggaagaagctgtggtggtcgtagctggagagttggtaac
aatggtggccgcaggggccgaggcagagccagggataacagtgacagaggtagcacagat
ggctgggacactggaggcggccagggcggggaggataagtggggtagtaatggtggtggg
gataagggaagtggttttgctgacgttaatgacatatcactaagcaacagtggtcggggt
ggaagaagaggcagtgatggtcatcctagctggggtgatacaaatgctggtggccatgag
ggaagtagttgtggctgggttggtaataacagtggtgttggtaacggaggtggctggggc
ggtggaagttgtcagggtgggaacagcagcgatggaaatgatcaggcacgtagttttgct
gatgggaatgatgataattcagctggtgctagtggcggagggtggggtggcaacaacaat
ggtggcagtagcaaaggtggctggggtggtaactctgatggtggagctggtagtgggtgg
aattaa
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