Zingiber officinale (ginger): 121979450
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Entry
121979450 CDS
T08725
Name
(RefSeq) multisubstrate pseudouridine synthase 7-like isoform X1
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121979450
Enzymes [BR:
zof01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
121979450
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
121979450
Prokaryotic type
121979450
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
R3H_PUS7L
Motif
Other DBs
NCBI-GeneID:
121979450
NCBI-ProteinID:
XP_042387374
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All DBs
Position
5A:6601730..6620833
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AA seq
680 aa
AA seq
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MAKSLDESDVGISCFVSSLPGFRGILKQRYSDFIVNEVDVDGNIVHLTSFDLPLEDTEGE
VEDNACSDDKDYTSVIESFRLLCGEVDADALKEFIAKVLSLERDVPPVMLAPDPDKSHRA
EVHNFFKKNFKFLVTDTVEESGENSKYIRVRRRSGNGGGPSKRGMKRKDKDDKPFDSRGS
KSWPEHLGKFLRFNLYKENKDTQEALGLIGKMLGVNQRSFGFAGTKDKRSVSTQRVTIFK
QRAKRLSELNSRMFGIKVGDFCYVNEGLVLGQLTGNHFTITLRGISADSEDIIKEATDSL
WRNGFINYYGLQRFGSGSVPTHLVGAALLKGEWKTAASLILDPREGERPIVREAREYYKE
HGDVDLTLKKLPRHLVAERSILQCLKKFPGNYLQALKTIPRTLRMMYVHSYQSYLWNHAA
SMRVQKYGISQVVLGDLVLCKEVLPTVCDSSEHEDDFNDGDNSLLDLSDELPSEENVQFV
KAVDSEDLLKGHYTFEDVVLPLPGSRIRYPTNDIANVYHDLAKKDGISLTEGVHGAKEFS
ISSMKGAYRQVFQRPIDFVWELVDYTNDNLPLAETDLDILEKAANMTQNEVHVDGICSSQ
IKTSDTENSIGTHLDEDSNENPLSTIETINSSDILSKKQALKMAFTLPTSCYATMAIREI
LKSSTSSWMSRLCRFLIIKH
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatcgctcgacgagtccgatgtcggcatctcgtgcttcgtctcctcccttccc
ggcttccgcggcatcctgaaacagaggtactctgactttatagtaaacgaagtagatgtt
gatggcaatattgttcatctcacctcctttgatcttcccttagaggatacggagggcgaa
gttgaagacaatgcttgctcggacgacaaagattacacctcagtgatcgaatcgtttcga
ttgctatgcggtgaggtggatgctgatgcattgaaggaatttattgcaaaagttttgtcc
ttggaaagagatgtaccgcctgtcatgcttgctccagatcctgacaagtctcatcgagca
gaagttcacaatttcttcaagaaaaatttcaagtttttggtcacggatactgttgaagaa
tctggagagaattcaaaatacataagggtgaggcgccgttcaggcaatggaggaggccca
agcaagagaggaatgaaaaggaaagataaagatgacaaaccatttgatagccgaggctct
aaaagttggcccgagcatcttggcaagtttctaaggtttaacctttataaagagaacaag
gatacacaggaggctctaggactgattggaaagatgctgggagtcaatcaacggtcattt
ggctttgctggtacaaaagataaacggtccgtgtctactcagagggttaccatcttcaag
cagcgggcaaaaaggttgtctgaacttaacagcagaatgtttgggattaaagtaggagat
ttctgttacgtgaatgaagggcttgttcttggtcagcttactggaaaccatttcacaatt
actttgagagggatctctgcagattctgaagatatcatcaaggaagccacagatagctta
tggagaaatgggtttatcaactattatggtttacagcgttttggaagtggttcagtgcca
actcatcttgttggagcagcattacttaagggtgagtggaaaactgctgctagcttgatc
cttgatcctagggagggagaacgcccaattgtaagggaggcacgcgaatattataaagag
catggtgatgttgatttaactctaaagaaattacctcgccatctagttgctgagagatct
attcttcaatgtttgaagaaattccctggaaactatctgcaagcattaaagactatacct
agaacattgaggatgatgtatgtgcatagctaccaaagctatctatggaatcatgcagct
agcatgagggtgcaaaaatatggcatttcacaagttgtacttggtgaccttgtgctctgt
aaagaagttttgcctacagtttgtgacagttcagaacatgaagatgattttaacgatgga
gataattctttgttggatttgtctgatgaactaccttcagaagaaaatgttcagtttgta
aaagctgttgattccgaagatcttcttaaaggacactacacatttgaggatgttgtactt
ccattgcctggttcaagaattagatatccaacaaatgatattgctaatgtatatcatgat
ttggctaaaaaggatggaatcagtttgacagaaggtgttcatggtgccaaggaattctca
atttctagtatgaagggagcttatagacaagtgttccagcgccctatagattttgtatgg
gaactggtggattacacaaatgataatttgcccctagcagagactgatttggatatcttg
gagaaagctgctaacatgacacagaatgaagtacatgttgatggaatatgtagcagccaa
attaaaacctccgatacagagaattcgattggcacgcacttggatgaggatagcaatgag
aatccattatcaacaattgagaccatcaacagttctgatattctatcaaagaagcaagct
ctgaagatggcatttacccttccaacttcatgttatgccacaatggccataagagagata
ctaaaatcttcaacctcgagttggatgtcccgtctgtgcaggtttcttatcataaagcac
taa
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