Zingiber officinale (ginger): 121979639
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Entry
121979639 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121979639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121979639
03012 Translation factors [BR:
zof03012
]
121979639
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121979639
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121979639
Translation factors [BR:
zof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121979639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
R3H
HA2_N
nSTAND3
ATPase
AAA_22
AAA_19
Ank_5
Ank_2
AAA_7
PhoH
ABC_tran
Rad17
Ank_3
RsgA_GTPase
AAA_16
AAA_11
TsaE
Ank
AAA_23
Motif
Other DBs
NCBI-GeneID:
121979639
NCBI-ProteinID:
XP_042387566
LinkDB
All DBs
Position
5A:complement(7882906..7909958)
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AA seq
1251 aa
AA seq
DB search
MAVARGVFRFPGHLRFETAGGLLEGGRKNRKGGHRREEAPSRRLAFRSCMGKELERKRMG
KKDGRGGVQQHQPPPPGLVTEFSRVRISKTLEEFRGSQAEVYTFEPGLSKEERAVIHIMC
RKMGMLSKSSGRGERRCLSVYKNKKENASIKKEEFTTYLQFSEDTKNILQDLFMHYPPED
MDLSEDAVRNTREKIGNRQWKQDATFSKPSISKSDIAKKVEELSSRISNSAELGKVIEDR
AKLPIASFEHAITSTLENNQVVLISGETGCGKTTQVPQYLLEHMWDKGEVCKIICTQPRR
ISAISVAERISYERGEPVGETVGYKIRLESKGGKHSSIIFCTNGVFLRLLISRGSSFSSI
DAGNSSLEDCLQGITHVIVDEIHERDRYSDFMLTILRDLLPAYPHIRLALMSATLDAERF
SNYFNGCPIIQVPGFTYPVKTFYLEDVLSILKPVDDNHLNHVAVNDSEESNPLSAEDKSV
LDEAICLALTNEEFDPLLELISTEQTPRIYNYRHSSTGVSPLMVFARKGRVGDVCMLLSY
GADCALCDNSGKRALDWAECENQGQTYEIIKKHMEKDKSKSVEDEELINEYLASVNQEHI
DTVLIERLLEKICTDPIEGAILIFLPGWDDINQTRERLVASPFFQDQSKFWIISLHSMIP
SAEQKKVFKRPPVGARKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHSS
WVSKASARQREGRAGRCRPGTCYHLFSKFRAASLPDYQVPEIKRMPIEELCLQVKLLDPS
CRLADFLQKTLDPPVSETVRNAIIVLQDIGALTDDERLTDLGKQLGSLPVHPTTSKMLLF
AILMNCLDPALTLACAADYREPFLLPMAPDGRKKATLAKLELASLCGGCSDQLAVVAAFD
CWKKAKERGQESQFCSRYFVSSGTMNMLCNMRKQLQSELAKHGFIPKDASNCSLNAHDPG
ILRAVLMAGAYPMVGRFLPRRKNDNRTVVETASGAKVRLHPHSSNFNLSFSKEAICSLVI
YDEITRGDGGMYIKNCSLVDPYPLLLLAKELAVAPSDDLDANDEDLDDSSNERDELGPNK
SSSTRGEEIMSSPDNNVSVFVDGWLRFESTALDVAQIYCLREHLSSTILFKVKNPRAVLP
PALGASMYAIACILSYDGLPRALSEAAFDGRSSVGDAGNTNKPIQGRRRAGFIPPGAFLR
SLFSAEVETPHVQKYRKTQQSQSAPRAPNTPFHGPKFGSSAPRRRSFKRRR
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcgcccgcggtgtgtttaggtttcctgggcatttacgtttcgaaacggcaggt
ggcctgctcgagggcggccgaaagaacagaaaaggcggccaccgacgggaggaggcgccg
tctcgccgtctcgcgtttcgcagctgcatggggaaagagcttgaaagaaaacggatgggg
aagaaggatggaagaggaggcgtgcagcagcaccagccgccgccgccgggcctcgtcact
gagttctcccgcgttcggatttccaagacacttgaagagttccggggctcccaagctgaa
gtttatacatttgaaccaggattgtcaaaagaagaacgtgcagtaatccatattatgtgc
aggaaaatgggtatgctgtcaaaaagttcagggcgtggagaaagaaggtgcctttctgtg
tacaaaaacaaaaaggaaaatgcatccattaagaaggaagagtttactacatacttacaa
ttttcagaagatacaaaaaatattcttcaagatcttttcatgcattatccacctgaagat
atggatctgagtgaagatgcagtaaggaacacgagggaaaaaattggtaatcgacaatgg
aagcaagatgccacctttagtaaaccatcaattagcaagtctgacattgcaaagaaggtg
gaagagttatcctccagaataagtaattcagcggagctgggaaaggttatagaagacaga
gctaaacttccaattgcatccttcgaacatgccattacttcaacactagaaaataaccag
gttgtacttatatctggtgagactggttgtggaaaaactactcaggttcctcagtatctg
ttggaacatatgtgggataaaggtgaagtttgtaagatcatatgcacacaacctagacgc
atttcagctatttcagttgctgagaggatctcatatgaaagaggggaacctgttggagag
actgttgggtataagattcgactggagtccaagggtgggaagcactcctcgatcatattc
tgcactaatggagtgtttttgagattgttgatcagtagaggttcaagtttttcaagcatt
gatgctggaaacagttcactggaggactgtttgcaaggaataacccatgttattgtggat
gaaattcacgagagggatagatattctgattttatgctgacaatactcagagatttgctt
cctgcttatccacatatacgattggcgctcatgagtgctactcttgatgctgagcgattt
tccaattacttcaatgggtgcccgattattcaagtcccaggatttacatatcctgtcaag
actttttatttggaagatgtgctttctatcctgaaacctgtggatgataaccatttaaat
catgtggcagtgaatgattctgaggaatctaatcctctgtctgcagaagataaaagtgtc
ttagatgaagcaatttgtttggctttaactaatgaagaatttgatcctttactagagttg
atttctactgagcaaacacctagaatctacaactacaggcattcttctactggtgtatca
cccttgatggtatttgctagaaagggcagagttggtgatgtttgcatgcttctttcttat
ggtgctgattgtgctttatgtgacaacagtggtaaacgtgctctagattgggctgaatgt
gagaaccaaggtcagacatatgaaattatcaaaaaacatatggagaaagataaatcaaaa
tcagtagaagatgaggagctaataaatgaataccttgcaagtgttaatcaagagcacatt
gatactgttcttatagagcgactattagagaaaatttgcactgatccaatagaaggagct
attctcatttttcttcctggatgggatgacattaaccaaaccagagagaggttggttgca
tcaccattctttcaggaccaatcaaagttttggataatctctctgcattctatgattccg
tctgcagagcagaaaaaggtttttaaacgcccacctgttggtgctcgtaaaatcattctg
tcaacaaacattgctgagactgctgttacaattgatgacgttgtatatgtcatagatagt
ggccggatgaaggaaaaaagttatgatccatatagcaatgtatccacacttcattcttct
tgggtgtcaaaagctagtgcaagacaacgtgagggtcgtgctggtcgttgtcgaccagga
acctgttaccatcttttttcaaaatttcgtgcagcatctttgccagactaccaagttcct
gaaattaagaggatgcctattgaggaactttgcttgcaggtaaaattgcttgaccccagt
tgtagactagctgactttctacaaaaaacattggatcctcctgtttcagaaacagttcgc
aatgcaattattgttcttcaagatataggtgctttgacagatgacgaaagactcactgat
cttgggaagcagcttggttcccttcccgttcatccaacaactagcaagatgcttttgttt
gcaattctgatgaattgcttggaccctgcattaactctagcatgtgcagctgattatcga
gaaccattccttctcccaatggctccagatgggaggaagaaggctactcttgcaaaactc
gaacttgcctctttgtgtggtgggtgcagcgatcaacttgctgttgtagctgcatttgat
tgttggaagaaggcaaaagaaagaggtcaggaatcacaattctgttctaggtattttgtc
tcatctggtacaatgaatatgctatgtaacatgaggaagcagcttcagagtgagctagca
aaacatggatttattccaaaagatgcatctaattgtagtttaaatgctcatgatcctggt
attcttcgagcagtcctcatggctggtgcttatccaatggtaggaagatttcttcctcgc
cggaagaatgataacagaactgtagtggaaactgctagtggtgccaaagttcgcttacat
ccacattcttcgaactttaatttatcatttagtaaggaggctatttgttcacttgttatt
tatgatgaaattactcgtggggatggagggatgtacataaaaaattgttctcttgttgat
ccatatccattattattgcttgcgaaggaattggctgttgctccttctgatgaccttgat
gcaaatgatgaagatttagatgattctagcaatgagagagatgagttggggccaaacaaa
tcctctagtacacgtggggaagaaataatgtcttctcctgacaataatgtttcagtattt
gttgatggatggttgagatttgaatcaacagcccttgatgttgctcagatatactgccta
cgggaacatctatcttccacaatcttatttaaggtaaagaatccgcgggcagttctgcct
cctgctttaggggcgtcaatgtatgccattgcctgcattctctcttacgacggattaccc
agagcactttccgaggcagcatttgatggccgatcatcagttggagatgcagggaacacg
aacaaacctattcagggaagaagacgagccggcttcattccgcctggggccttcctcaga
tccttattttcagccgaagttgaaactcctcatgtccagaagtacaggaaaactcagcaa
agccagagtgctcccagggcacccaacacgccgttccatggtccaaaatttggtagctcg
gcaccaaggagaagatccttcaaaaggcgacgatga
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