Zingiber officinale (ginger): 121979702
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Entry
121979702 CDS
T08725
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog
KO
K28108
shortage in chiasmata 1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
121979702
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Meiosis-specific proteins
Others
121979702
BRITE hierarchy
SSDB
Ortholog
Paralog
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GFIT
Other DBs
NCBI-GeneID:
121979702
NCBI-ProteinID:
XP_042387624
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Position
5A:82033400..82043275
Genome browser
AA seq
1614 aa
AA seq
DB search
MRSRFLNVDYFASRSSIGTLNRFQFLPLPVPLPPPDPCPSDPSFDLGISLDGIRIDRGIT
LDVDPFPIEDALSQFLSDIIPKTLPAAEDGGSLRISPRKKRFRSVPGVFEDNKVSEGSGA
PDVVSEIVALLLHEERDLNGDLNLRHNELPAEDSERIELRQGIELHKDFLFEIVEIDLPL
GETMGSEPEASGIHFEIPGITISMDRVNIDIEVKVIYPHKIAKSIYLVDELDAIFDEHES
SLRTRNFSTVEPKLILPQFEVKTFLESDAGISSAEAFDCLLSVIGPCIGSQDDKLVVSAN
EFLESNSVDIMGDVSGECLMDYSHQDKPMCLNSILEMDMINIGDVMLLENGPILYAVPAD
GHYSHLPCSIHLQEIQNFDFHSDDVLQSYVSSQLGKTLEMTDLMVVDDINHTDGLYQSFV
STELALVDDTFKSLPTPILSDDKTMKSKSMIVEELLHTLEPHSLSACDGIYLDWHLVLEG
TCSNDVCLSYINMLYNVNTCETSSDVHIDRSEIASDIEFFEDFHESGDTLQSKELPTKDQ
YCVQHVTQLPFQNETAQLTNQGSLNEKTPEWKHNIISDNSSVLFESMTQSNDLNFFLDVR
RGTSMRNYGHQAMKGSDKKISLPIPLSQNPCFTCEIPKEKFAQWVVDVHTVTLSDCILGL
MEHTQETYLTILEESPYLKTNNWKINNDYETSGLSKQNILNLIIDKVPKECISDSSHEDI
TTLIALYGVKKLAYFLCFFGVHAAHLYISYLIGSIKKLAGRLQHLETLLEDIRSKSDRQL
IESHPSLVLIEGILNSNIHNAEKILIVAERVFWLPLTRKLASMGTKYYTIMINNMPLNSV
DERDNDAYDHSFLEGLQHSDCLIASYENISASFPFKKFGIILEYGGPYASSRLSSMVPIL
DGLPRVHFIHVEFATHPTALFLCEGPDDTSSQSIPGVEKSLNNIIEILNFVPSEKNSCLA
SKSGNERDSSYENQTIRSKDINCREPCFPEAVIIVNTQIFDKKMLISRRTSYKKILAMEK
AGLQIVERDVHLPLDLVLDAAVCLIWYEARNFMGSKATEDSFISMFVENMATSILISLSY
SFKSCILIFEGERSFLAAIMESSDALYAAASSLDINLQLFCSHEPDSTDDIILSCIKAAT
SSTKGIYPAMPESESIGESFLTRFPSINPLSAHVILSSGGSLVEFLQWSNERKIQAVAKY
RVPEESISLFSALCRFGEVGESKSVMTQCSSIDSDIDSQLLSSPRKKQRNVSHILPTPSD
DPFLACAEPLNQNIHLKENPPSFQQHQLRNFFNIHEKMRKIDNDDHNDMLDKTARGSAST
GNGLSGRNESNYRGKSFIDVINDECIFLDENLSSTSDAFNFFEAVDSDSEPTIRSSKSTS
RQTQSKKDHSVFPTSEEINHHMDSFLNDHPKFDDRIFKNEHTHFNYNKDDELVINCGHYK
SFMQDNNANIINLSAQEKAPPADAGNPFSNTARQSSLHGPGWFTDILNRLKEKGNKQQQT
IQTNPYCNSARILDTPIKTRSPSIIDTYRYQGNNQMSNPTKRKCKKDVKRQFSNNNKGKD
TPFITRTWTPIDKRARQNLYFTRNGNEKQSRLVWRSRDSPNLDSNIRKRHREDW
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atgcgatctcgattccttaacgtcgactacttcgcttcccgatcctctatcggaacccta
aatcgcttccaattcctcccacttcccgttccgcttcctcctcccgatccatgcccttcc
gatccttccttcgatctcggcatctccttagacggtatacgtatcgaccgcgggatcacg
ttggatgtagatccgttcccgatcgaggatgctctctctcagttcctatcggatatcata
cctaagacacttccagcagctgaggatggcggttcccttcgtatcagcccaaggaagaaa
aggtttcgttctgtaccaggagtattcgaagacaataaggtgtcggaaggatctggagcg
cctgatgttgtttcggaaattgtggctcttctactccacgaagagagggatctgaatgga
gatttaaatttgaggcataatgagcttccggctgaggattccgagaggattgaactgcgt
caggggattgaactgcacaaggatttcttatttgagatagtcgaaatagatctacccttg
ggagaaaccatgggctctgaaccagaggcatctggaattcactttgagattccaggcatc
actatttctatggatagagtcaatattgacattgaagttaaggtcatctatccccacaag
attgctaaatcaatttatttagtggatgaacttgatgccatattcgatgaacatgagtct
tctctaagaactaggaattttagtacagtggaacccaagttgatattaccacagtttgaa
gtgaagacctttttggaatctgatgctggtatttccagtgcagaagcttttgactgtctg
ctttcagttattggaccttgtatcgggtcccaagatgacaaactagtggttagtgccaat
gagttcttggaatctaatagtgtagatataatgggagatgtttcaggagaatgcttaatg
gactatagtcatcaagataaacctatgtgtctcaactccattctagagatggatatgata
aatattggtgatgttatgctccttgaaaatggtccaatactatatgcagttcctgctgat
ggacactattcccacttgccgtgttctatacatttacaggaaattcaaaattttgatttt
cattcagatgatgtcttgcaaagttatgtaagttcacaactgggtaagactctggagatg
actgatctaatggtggtagatgatattaatcacactgatgggctatatcaatcttttgtc
agcactgagctggcgctagtggatgatacgtttaaatcacttccaactccaatcctttct
gatgataagacaatgaaatcaaagagcatgattgtcgaagagttacttcataccctggaa
cctcattctctgtctgcttgtgatggaatatatttagattggcatcttgtgctggaagga
acatgtagtaatgatgtttgcctttcctacataaatatgctgtacaacgtgaatacttgc
gaaacaagttctgatgttcacattgaccgttcagagattgcatctgatattgaattcttc
gaggacttccatgaaagtggggacacactacagtctaaggaattgcccacaaaagatcaa
tattgtgtccagcatgttactcaactgcctttccagaatgaaaccgctcaactaacaaat
caaggatctctaaatgaaaaaactccagaatggaaacataacattatttcagataactct
tctgtcttatttgagtcgatgactcaatccaatgatctcaactttttcttggatgtgaga
agaggcacatcaatgagaaattatggacatcaagccatgaaaggttctgataagaagatt
tcgttacccattcctctctctcaaaatccatgtttcacatgtgaaattcctaaagagaag
tttgcacagtgggtagttgatgtgcatactgttaccctctctgactgtattttgggtctt
atggaacatactcaggaaacatatttgaccatcttggaagagagcccttatttgaaaacc
aacaattggaaaatcaacaatgattatgaaacttcaggcctttcaaagcaaaatattttg
aacctcattatagacaaagttccaaaagaatgcatttcagactctagtcatgaagatatc
acgaccttaattgccctatatggtgtcaagaagttggcatatttcttgtgtttctttggg
gttcatgctgctcatctatatataagctatttgattggaagcatcaagaaattagctgga
agattacaacatcttgagaccttacttgaagatataagaagcaaatctgacagacaattg
attgagtctcatccatcattggttcttatagagggaatactgaattcaaatattcataat
gctgagaagatactcattgtagctgagagggtattttggttacctttgactcggaagttg
gcttcaatggggacaaaatattacacaataatgattaataatatgcctctgaatagtgtg
gatgaaagagacaatgatgcatatgatcattcttttttggaaggcctacaacattcagat
tgtttaatagcatcttacgagaatatttctgcatcttttcctttcaaaaagtttggcatc
atcttggagtatggaggcccatatgcatcatcaagattatcctcaatggttcctatattg
gatggcttgcctcgagttcacttcatccatgttgaatttgccactcatcctactgcactt
tttctttgtgaaggccctgatgatactagctcacaatccatacccggtgtcgaaaagagc
ttgaacaacattatagagatcctaaattttgttccatctgagaagaatagttgtctagca
tccaaatctggtaatgagagggattcctcatatgaaaatcaaaccataagatcaaaggat
atcaattgcagggaaccttgcttccctgaagcggtaatcattgttaatacccaaatattt
gataagaaaatgcttatttctcgacgaacttcatacaaaaaaattttagcaatggagaag
gctggactacaaatagtggagcgagatgttcatctacctttggacttggtacttgatgct
gcagtttgcctaatttggtacgaggctagaaattttatgggcagtaaagctactgaagac
tcattcatttcaatgtttgtagagaacatggcgaccagcattctgatttctcttagttac
tctttcaagtcgtgcatactgatcttcgagggagagagaagcttcctcgccgccataatg
gagtcatctgatgcactatatgcagcagcctccagtcttgatattaatttgcaactattt
tgctcacatgagcctgattcaactgatgacataatattgagctgcattaaagctgcaact
agttcaactaagggtatatatccagcaatgcctgaatccgagtccattggcgaatcattt
cttacaagatttccctctataaatcctctctccgctcatgttatactttcctctggtggt
agccttgttgaatttctgcaatggtcaaatgaacgcaaaattcaagcagttgcaaagtat
cgtgtgcctgaagaaagtatttctcttttcagtgctctgtgccgatttggagaagttggg
gaatctaaatctgttatgacgcagtgttcctctatcgactcagatattgacagtcaactg
ttatcatcaccgagaaaaaagcagagaaatgtctctcacattcttccaacaccctctgac
gatccttttcttgcttgtgccgagccattgaatcaaaatattcatctaaaagaaaaccct
ccttcattccagcaacatcagttacggaattttttcaacattcatgagaaaatgagaaag
atagacaacgatgatcacaatgacatgttggataaaacagccagaggatctgcaagtact
ggtaatggtttgagtggaagaaacgaaagcaattacagaggtaaaagcttcattgatgta
atcaatgatgagtgcattttcctagacgaaaatctctcctcaacatcagatgccttcaac
ttttttgaggcagttgattctgacagtgaaccaacaatcagaagctctaaatctacaagc
cgacaaactcagagcaaaaaagatcattctgtattcccaacctcagaagagatcaaccat
catatggacagctttttgaatgatcatccaaagtttgacgacagaatatttaagaacgaa
cacacacactttaactacaacaaagatgatgaactagtgataaactgcggtcattacaag
agctttatgcaggacaacaatgcaaatattatcaatttgtcagctcaagagaaagctcca
ccagctgatgccgggaatccattctcaaatacagctcgacaatctagtttgcatggacca
ggctggtttactgatattctgaacagactgaaggagaagggcaacaagcaacaacaaaca
atccaaacaaacccatattgcaactctgcaaggattttagatacaccaataaagacgcgg
agcccttctatcatcgacacttacaggtaccaaggcaataatcagatgtccaacccaacc
aaacgcaagtgcaaaaaggatgtgaaaagacaattttcgaataacaacaaaggtaaggac
acacccttcatcaccagaacatggaccccaattgacaaaagagccagacagaatctttat
ttcacaagaaatggaaacgagaagcagagcagactggtttggagaagtagagacagcccg
aacttagatagtaacattaggaagagacaccgagaggactggtga
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integrated database retrieval system
