KEGG   Zingiber officinale (ginger): 121979767
Entry
121979767         CDS       T08725                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03082  ATP-dependent chromatin remodeling
zof03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121979767
   03083 Polycomb repressive complex
    121979767
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:zof03036]
    121979767
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     121979767
  Histone modification proteins
   HAT complexes
    HATB complex
     121979767
   HDAC complexes
    Sin3A-HDAC complex
     121979767
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     121979767
    PRC2.2
     121979767
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     121979767
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    121979767
  Chromatin remodeling factors
   NuRD complex
    121979767
   NuRF complex
    121979767
   NuRF complex (fruit fly)
    121979767
SSDB
Motif
Pfam: CAF1C_H4-bd WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 Beta-prop_WDR75_1st EIF3I WD40_RFWD3 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML MIOS_WD40 eIF2A WD_LRWD1 ANAPC4_WD40 Beta-prop_RIG_1st Beta-prop_HPS5 NBCH_WD40 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st
Other DBs
NCBI-GeneID: 121979767
NCBI-ProteinID: XP_042387696
LinkDB
Position
1B:131693579..131698940
AA seq 422 aa
MAKDEEEFRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRDEPAGKD
YSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAEYDARQYDDEHGEIGGFGSAGGKVQIVQ
QINHEGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHNSE
GYGLSWSQFKQGHLLSGSDDAQICLWDINATSKNKTLDALQIFKVHDGVVEDVAWHLRHE
YYFGSVGDDHYLLLWDLRTTNNKPVKSVIAHQGEVNCLAFNPFNEWVVATGSTDKTVKLF
DLRKLESALHTLDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED
GPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDEPP
RA
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggcgaaagacgaggaggaatttcgaggtgagatggaggagcgattgatcaacgaggag
tacaagatatggaagaagaacacgcctttcctgtacgacctcgtgatcactcacgccctt
gagtggccctcactcaccgtgcaatggctccccgaccgcgacgagcccgctggcaaggac
tactccgtgcagaagatgatcctcggcacgcacacctccgacaacgagcccaattatctc
atgctcgctcaagttcagctccccctcgaggacgcggagtacgacgcgcgccagtacgat
gacgagcacggcgagatcggcggctttggctccgccggaggaaaggttcaaattgttcag
caaataaatcatgagggagaagttaatcgagctcgctatatgcctcagaatccctttata
attgcaacaaaaactgttagtgccgaggtttatgtttttgactacagcaaacacccatca
aagcctccacttgatggtgcatgcaatcctgatttgaggttgaggggtcacaattctgaa
ggatatggtttatcctggagccagtttaagcaagggcacttgttgagcggctctgatgat
gctcaaatttgtttatgggacattaatgctacttcaaaaaataaaacccttgacgctctt
cagatttttaaggtacacgatggtgttgtagaagatgttgcttggcatttaaggcatgaa
tattattttggttcagttggtgatgatcattatctgctcctttgggatctccgaacaaca
aataacaagccagttaaatcagtaatcgctcatcaaggtgaggtcaactgcctagccttc
aatcccttcaatgagtgggttgttgcaactgggtctactgataaaactgtcaagttattt
gatcttcggaagcttgaaagtgcactgcatacattggactgccacaaagaggaggttttc
caagtcggttggagtcccaaaaatgagacaattctagcatcctgctgtcttggacggagg
ctcatggtgtgggacctcagcaggatcgatgaggaacaaacacccgaggatgctgaggat
ggcccaccagagttgctgttcatccacggtggccacaccagcaagatctctgatttctca
tggaatccctgtgaagattgggtggttgcgagcgttgcagaagacaacatcctccaaatt
tggcaaatggcagaaaacatataccacgacgaagatgatttgcctggtgatgaacctccc
agagcttag

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