Zingiber officinale (ginger): 121979879
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Entry
121979879 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121979879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121979879
03012 Translation factors [BR:
zof03012
]
121979879
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121979879
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121979879
Translation factors [BR:
zof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121979879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
nSTAND3
HA2_N
AAA_22
ATPase
Ank_2
AAA_19
AAA_7
Ank_5
AAA_25
Sulfotransfer_2
Rad17
ABC_tran
PhoH
SRP54
Myosin_head
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
121979879
NCBI-ProteinID:
XP_042387797
LinkDB
All DBs
Position
1B:complement(133090820..133107243)
Genome browser
AA seq
1196 aa
AA seq
DB search
MGRKNGKGGGQQQQQGPVSEASRVRIARILEEFQASQDEVYTFEPGLSKQERALIHMMCR
KMGMVSRSSGYGERRQLSVYKSKRKNRSLKKEEVNAGLQLSEETKNIIQDLFMRYPPDDT
DLSEDAAPNSKANAAKRQWKPDTSFCRPSMGKSDIQQKMDELASKISNSTHLTKVVEDRA
KLPIASFKHLITSTLENNQVVLISGETGCGKTTQVPQYLLEYMWDKGETCKIVCTQPRRI
SAISVAERISYERGETVGETVGYRIRLESKGGKQSSIMFCTNGVLLRLLISRGSSMSSTD
SGNSLLEDCFQGITHVIVDEIHERDRFSDFMLTILRDLLPSYPHIRLVLMSATIDAERFS
NYFFGCPIIQVPGFTYPVTVFYLEDVLSILKSMDDNHLNHAAVDSDESSPLSEEYRNSLD
EAVTLALTNEEFDPLLELISSEQTQRIYNYRHSSTGVSPLMVFAGKGKVGDVCMLLSYGA
DCSLSDNNGRCALDWAECENQIQVYEIIKKHMEKDNSKSVEEEKLLNEYLACINPEHIDT
LLIERLLRKICTDSTEGAILIFLPGWDDINQTREKLVASSFFQDESKFLILSLHSMIPSA
EQKKVFKCPPIGIRKIILSTNIAETAVTIDDVVYVIDSGRMKEKNYDPYNNVSTLHSSWV
SKASARQREGRAGRCQPGTCYHLFSKFRAVSLPEYQVPEIKRMPIEELCLQVKLLDPNCK
VADFLQKTLDPPVSETIRNAIIVLQDIGALMNDEKLTDLGEKLGSLPVHPSTSKMLLFAI
LMNCLDPALTLACAADYREPFLLPVAPDERKKAALAKLELASLYGGYSDQLAVVAAFDCW
KKAKGRGLESQFCSRYYISSSTMNMLFSMRKQLQSELAKHGFIPQNVSSCSVNAHDPGIL
RAVLVAGAYPMIGRLLPRRKNDKRAIVETAGGAKARLHPHSSNFDFSLRKQAECPLVLYD
EITRGDGGMYIRNCSLVGPYPLLFLAVEMVVAPTSGPDDSDEDVDDSGDEEDEMEQLVSS
SHGEEIMSSPENNVSVVIDGWLRLESTALDVAQIYCLRERLFSAILFKAKNPQAVLPPAL
GASVYAIACILSCDGLPSALADAPPYRQQSPRDKVDMNKNKSIQGKRQGGFIQPGGFLRS
LISDNVRTPNVHIVRNAKHSSHMQSYSQPHVSPISTFSGANSSSSTPRIRSFKRHR
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaagaacggaaaaggaggagggcaacagcagcagcagggaccggtctccgag
gcctctcgcgttcgaattgcgagaattcttgaggagttccaggcatcccaagatgaagtt
tacacatttgaaccaggtttgtcaaaacaagagcgtgcattaattcatatgatgtgcaga
aaaatgggcatggtatcgagaagttctgggtatggagaaagaaggcaactttctgtatac
aaaagcaaaaggaaaaaccgatcccttaagaaggaagaagttaatgctggattgcaattg
tcagaagagacaaaaaatattatacaagatcttttcatgcgttatccgcctgatgataca
gacctgagtgaagatgcagcacccaactctaaagcaaatgctgctaaaagacagtggaaa
ccagatactagcttttgtaggccatcaatgggaaaatctgacattcaacagaagatggac
gagttagcctctaaaataagtaattcgacacatcttacaaaggttgtggaagatagagct
aaacttccaattgcatcgttcaaacatctgattacttccacactggaaaataaccaggtt
gtacttatatccggtgaaactggttgtggaaaaaccactcaggttcctcagtatctgttg
gaatatatgtgggataaaggtgagacttgcaagatcgtatgcacacagccaagacggata
tcagctatttcagttgctgaaaggatctcttatgaaagaggggaaactgttggagagact
gttggatacaggattcgcttggagtcgaagggtgggaaacaatcgtcaataatgttctgc
acaaatggagtacttttgagattgttgattagcagaggttcgagtatgtcaagcactgac
agtgggaacagtttactggaagactgtttccaaggaataactcatgttattgtggatgaa
attcacgagagggatagattttctgattttatgctgacaatactcagagatttgctgcct
tcatatccacatatacgattggtgctcatgagtgctactattgatgctgagcgattttcc
aactacttttttggatgccccattattcaagttccgggtttcacttatcctgtcacggtt
ttttatttggaggacgtgctttctatcttgaaatctatggatgataatcatctaaaccat
gctgcagttgattctgacgagagtagccccctgtctgaagaatacagaaattctctggac
gaagcagtaactttggctttaactaatgaagaatttgatcccttgctagaattgatttct
tctgagcaaacacagagaatctacaactacagacattcttcgacgggtgtatcacccttg
atggtatttgcaggaaagggcaaagttggtgatgtctgcatgcttctatcctatggtgct
gattgttctttatctgacaacaatggtagatgcgctctagattgggctgaatgtgagaat
cagatccaggtatatgaaattatcaagaaacatatggagaaagataactcaaaatcagta
gaggaggagaagctgctaaatgagtaccttgcatgtattaatccagaacatatcgacact
ctgctcatagagcgactcttaaggaagatttgcactgattcgacagaaggagcaattcta
atctttcttcctggatgggatgacattaatcaaaccagagaaaagttggttgcttcatca
ttctttcaagatgaatcaaagtttttgatactctctctccattctatgattccatctgca
gagcaaaagaaggtttttaaatgcccgcctattggcattcgtaaaatcattttgtcaaca
aacattgcagagactgctgttacaattgatgatgttgtatatgtaatagatagtggtcga
atgaaggaaaaaaattatgatccatataacaatgtatctacacttcattcttcttgggta
tcaaaagctagtgcaagacaacgtgagggtcgtgctggtcgttgtcagccagggacctgt
taccaccttttttctaaattccgtgcagtatctttgccggagtaccaagttcctgagata
aaaaggatgcctattgaggaactttgtttgcaggtaaaattgcttgatcccaattgtaaa
gtagcagattttctacaaaaaacacttgatcctcctgtttctgaaacaattcgcaatgca
ataattgttcttcaagatattggtgccttaatgaatgatgaaaaactgactgatcttggg
gagaagcttggttcccttcctgtccatccctcaactagcaagatgcttttatttgcaatt
ttgatgaattgcttggaccctgcattgactctagcatgtgcagctgattatcgagaacca
ttccttcttccagtggctccagatgagaggaagaaagctgccctagcgaaacttgaattg
gcttccttgtatggtggttatagtgatcaacttgctgttgttgcagcatttgattgttgg
aagaaggcaaaaggtagaggtctggagtcacaattctgttctaggtattatatctcatca
agcacaatgaatatgctatttagcatgaggaagcagcttcaaagcgaacttgcaaaacat
ggatttattccacaaaatgtgtcaagttgtagtgtaaatgctcacgatcctggtattcta
cgggctgtacttgtggctggtgcatatccaatgatcgggagattgcttccacgtcgaaag
aatgataaaagagccatagtggagactgctggtggtgccaaagctcgcttgcatccccat
tcttctaactttgatttttcattaagaaagcaagctgagtgcccacttgttctttatgat
gaaattactcgtggggatgggggaatgtatataagaaactgttctcttgttggtccatat
ccattattgtttcttgcagtggaaatggttgttgctcctacaagtggccctgatgatagt
gatgaagatgttgatgattctggtgatgaggaagatgagatggagcaacttgtatcctct
agtcatggggaagaaataatgtcttctcctgaaaataatgtttcagtagttattgatgga
tggttaagacttgaatcaactgcccttgatgttgcgcagatatattgccttcgtgagcgt
ctattttccgctatcctattcaaggcaaagaatccacaggcagttctaccacctgctttg
ggggcgtcagtgtatgctattgcctgtattctttcttgtgacggattgcctagtgcactt
gctgatgcaccaccatatcgacagcaatcccctagagataaagttgacatgaataagaat
aaatctattcagggaaaaagacaagggggcttcattcaacctggtggcttcctgagatcc
ttaatttcagacaatgtccgaactcctaatgtccacattgtcagaaatgctaagcatagt
tctcacatgcaatcatattctcagccacacgtctcacccatctctactttttcgggagca
aattctagtagttccacaccaaggataagatcattcaagaggcatcgttga
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integrated database retrieval system
