Zingiber officinale (ginger): 121980238
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Entry
121980238 CDS
T08725
Name
(RefSeq) uracil-DNA glycosylase, mitochondrial-like
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121980238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121980238
Enzymes [BR:
zof01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
121980238
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
121980238
Prokaryotic type
121980238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
121980238
NCBI-ProteinID:
XP_042388143
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All DBs
Position
5A:14059980..14068971
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AA seq
317 aa
AA seq
DB search
MASTPKTLDEFFHPAKRLRSLSPSSASLETPTPPGKLSPSRRETPPEASAPALTPEKKRR
MDINKALARSRRNLSVCRERIEKAKADGLDYVKLEELLVEETWLQALPGELQKPYAKNLC
RYVEREVRGSVPIYPPPYLIFYALHLTPFDQVKVVLIGQDPYHGAGQAMGLAFSVPEGVK
IPSSLVNIFKELQEDLGCSVPLNGNLERWAAQGVLLLNTVLTVRNHQANSHAKKGWEPFT
DAIIRTISQKKSGVVFLLWGNSAQEKSRMIDGSKHHILKAAHPSGLSANRGFFGCRHFSQ
TNQILEKLGLSPIYWQL
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgacgccgaaaaccctagatgagtttttccatccagcaaaacgcctccggtcc
ctctccccctcctcggcctccctggaaactccaactccccccggcaagctctctccctcc
cgccgcgagactccgccggaggcctctgcccccgctctgaccccggagaagaagcggagg
atggatatcaacaaggccctagcgcgatcgaggaggaacctcagtgtctgcagagaaagg
attgagaaggccaaagccgacggtttggattatgtgaagttggaggagcttctggtggaa
gagacttggctgcaggctctcccgggggagcttcagaagccgtatgcgaagaacctttgt
agatatgtggagcgtgaggtcagggggagtgttccgatatatcctccgccatacctgatt
ttttatgctctccatttgacgcctttcgatcaggtgaaagttgtgcttattggacaggat
ccatatcatggagctggtcaagccatgggtctagctttctctgttccagaaggtgtcaag
attccttcgagtttagtcaatattttcaaggagcttcaagaagatttagggtgttctgtg
ccattaaatggaaatctggaaagatgggcagcacagggtgttctgttgcttaacactgtt
ctcactgttaggaatcatcaagcaaactcacatgccaagaaagggtgggagccatttact
gatgctattattagaacaatttctcagaagaaatctggggttgttttcctcctgtggggg
aattctgctcaagaaaagtcgaggatgattgatggatcaaaacatcatattctgaaggct
gctcatccatctggtctttctgcaaatagggggttctttggatgcaggcatttctcacag
acaaatcaaatcctggagaaacttggtctttcgcctatctattggcagctgtag
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