Zingiber officinale (ginger): 121980315
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Entry
121980315 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121980315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121980315
03009 Ribosome biogenesis [BR:
zof03009
]
121980315
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121980315
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
121980315
Complex B
121980315
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
121980315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
121980315
NCBI-ProteinID:
XP_042388244
LinkDB
All DBs
Position
1B:134383345..134395489
Genome browser
AA seq
1170 aa
AA seq
DB search
MATADAAPGSLGPQYAPDDPTLPKPWKGLIDGNTGFLYYWNPENNITQYEKPEASVPPPS
NSLPKLAPIPMASNFPPNVTSSHQPSQQISQESLHQTQPQQQPSQPLFQQQGQLTESPQQ
RQQPPPSQHLQLQHPSGQQVLLQNTQMPVHQSHQLPNQQTAPQAPQQYMPIHQQDGLHQH
VPYLQGSLVQPPQIQQQHGFQFSNQQVQQSQGPYQQGQQPQGPQGVQIPNQQQQGQQTLG
SQTPLSHGYQVLHQETQHTLQAGQQQGQQSQGLQSGNQQVQQSQGQQPRFPWMEDALHQE
GKLGTLPSPGVASAGHHLPDLVPQVGIPPGAGRTSQSPNQFGGPSTQNASPFQAWNTGIE
ANFGIQQQRGTAVPNPSSNPIVRPPVGGKTTYGGTQNEIPGNEFYPPAKMERSMMYPHQP
RLAALPIPQNQSDPGFRSHFDAPDLSGGIGVGPQNTPPNMHGHAAFHNPSVSRPSPGMMG
SSDFHNISAADAYKQHHEVTAMGNDVPLPFMTFEATGFPPEILREMHLAGFSTPTPIQAQ
TWPVALQNRDIVAIAKTGSGKTLGYLIPAFIHLRRCQNNPQFGPTVLVLAPTRELASQIQ
DEAFKFGRSSRISCTCLYGGAPKGPQLKEIERGADIVIATPGRLNDFLEMKKISFRQVSF
LVLDEADRMLDMGFEPQIRKIVNEIPPHRQTLMYTATWPKEVRKIANDLLKNPVQVNIGN
VNELVANKSITQHIEVVTPMDKSRRLEQILRTQERGSKVIIFCSTKRQCDQLARSLGRTF
GAASIHGDKSQSERDHVLFQFRSGRAPVLVATDVAARGLDIKDIRIVINFDFPTGIEDYV
HRIGRTGRAGATGVAYTFFTDQDWKHAVDLVKVLEGSNQRVPPEIREMAGRGGPPLSRPR
NEPNRWDSGGGNGGGAGRWNARGGRGGGMRDGPSGFAGRGGGMRDGPGGGMRDGPGGFGG
PAGFGGRGGRQDFFGGRAPRGRGFGGPGGPGGRGRHDWSPHDRSINSDGRKRYDGRRGFG
ERGRERSYSRSPEMVRTWGYDRSRGRSGSRSQSRSRSRSRSWSRSRSWSSRSRSRSRSRS
RERVKRPSGWDSTPAPCLIATPVAAVAEAPQVVEGHGPSLVAGHELNVLASGPVLATSPG
YGNGSLSRNELQEQFPRPDGGSPRDAEHLN
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagctgatgccgcccctggttcactgggtccgcagtatgcacctgatgatcca
acacttccaaagccatggaaaggtttaatcgatgggaacactggcttcttatactactgg
aacccagaaaataacattacacaatatgagaaaccagaagcatcagtccctcccccatca
aactccttgcctaagcttgctcctattcccatggctagtaattttcctcccaatgtcact
agctcacatcaaccctcccagcagatttctcaggaatctttgcatcaaacgcaaccacaa
caacagcctagccagccattatttcagcagcagggccagttaactgagtcaccacagcaa
cggcaacaaccaccaccaagtcagcatctccaacttcagcatcctagtggtcagcaagtg
ctacttcagaatacccaaatgccagttcatcagtcacatcagttgccaaatcaacagacg
gcaccacaagcacctcaacagtatatgccaattcatcaacaggatggcctacatcagcat
gttccttatcttcaagggtctctggtgcaaccaccccagattcagcaacaacatgggttt
cagttttctaaccaacaggtgcaacaatcacaaggaccatatcagcaggggcaacaacca
caaggtccacaaggggtgcaaatcccaaatcaacaacagcagggtcagcagacacttggg
tcacagactccactttcacatggatatcaggttttgcatcaggagacccagcatacttta
caagctggacaacaacaaggtcaacagtcacagggccttcagagtggaaaccagcaggtc
cagcagtcacaaggacaacaaccaaggtttccttggatggaagatgcattgcatcaagag
ggaaaactaggcacacttccctcacctggtgttgcatcagctggtcatcacctgccagat
ttggttcctcaggttggtattccacctggggctggccgcacttctcagtcgcctaatcag
tttggtggacctagtacgcaaaatgcttcaccttttcaggcatggaatacagggatagaa
gcaaattttgggattcaacagcagagaggcactgcagttccaaatccatcatctaatcca
attgttcgacctccagttggtggaaagactacgtatggagggactcaaaatgaaattcca
ggaaatgaattttatccacctgcgaaaatggaaagatcaatgatgtacccacatcagcca
aggcttgctgcccttcccatcccacaaaaccaatcagatccaggtttccgttctcacttt
gatgcaccagatctctcaggtggaataggtgttggtccacagaatacaccacctaatatg
catggtcatgctgccttccataatccaagtgtatcaaggccatcaccaggaatgatgggc
tcatcagattttcacaatatttctgccgccgatgcatacaagcagcaccatgaagttact
gcaatgggaaatgatgttcctctaccattcatgacatttgaggccactggtttccctcca
gagattctcagagagatgcatctggctggattttcaactccaacaccaatacaagcacaa
acatggcctgttgcattacagaacagggatattgttgcaattgccaaaactggttcgggc
aagacactaggctatcttatacctgcattcattcatcttagacgctgccaaaataatcct
caatttggaccaactgtattagttttggctccaactcgggaacttgcttctcaaatacaa
gatgaggcttttaaatttggacgctcatcaagaatttcttgtacatgcttatatggagga
gctccaaaaggtcctcaactgaaagagattgaacgaggagcagatatcgtaattgcaact
ccaggccgcctcaacgatttccttgagatgaagaaaatcagtttccgtcaagtttccttt
ctggtccttgatgaagctgaccgcatgctggatatgggttttgaaccacaaattaggaag
attgttaatgagatccctcctcacaggcaaactctcatgtatacagcaacttggccaaag
gaagtgagaaaaatagccaatgatttgttgaagaatccagttcaggtgaatattggcaat
gtcaatgagcttgttgctaataagtcaatcactcagcatatagaggttgttacaccaatg
gataaatcaaggcgcttggaacagattcttagaactcaagagcgtggatctaaggtcatt
atattctgttccacaaagaggcagtgtgatcagttggctcgcagtctagggcgaaccttc
ggtgcagcttccattcatggcgacaaatctcaaagtgaaagggatcatgttctattccaa
ttccgctctggcagggctccagttcttgttgccactgatgttgccgccaggggacttgat
atcaaagacatcaggatagttatcaattttgactttcctactgggattgaggactatgtt
cataggattggaagaactgggagggctggtgctacaggagtagcatacacattctttact
gaccaagattggaaacatgctgttgatcttgtaaaagtacttgaaggttcaaaccagcga
gttcctcctgagattcgtgagatggctggtcgtggtggtccacccctgtccaggcctcgt
aatgaacccaatcgatgggattcgggtggaggcaatggtggcggcgctggtaggtggaat
gctagaggaggccgtggcggcggcatgagggatggtcccagtggctttgctggacgaggc
ggtggcatgagggatggacctggtggtggcatgagggatggtcctggtggcttcggtggg
cctgctggctttggcgggcgtggtggcaggcaagatttctttggtggtcgtgcacctaga
ggtcgtgggtttggtggaccaggtggacctggaggtcgtggtcgacatgattggagtcca
catgaccgaagcataaattcagatggaagaaagcgatatgatggccgcaggggatttgga
gaaaggggcagggagagaagttatagtcgtagtccagagatggttcggacatggggttat
gatagaagcagaggtagaagtgggagcaggagtcagagtcgcagtcgtagtcgcagtcgc
agttggagccgtagtcggagttggtcatcgagaagcaggagccgaagtaggagcaggagt
cgtgagagggttaagaggcctagtgggtgggactctacacctgctccttgtctcattgca
acacccgttgcagcagtagcagaagctccacaggttgtggaggggcatggaccttcacta
gttgcagggcatgagctcaatgtactggcttcaggccctgtgttggcaacgtcaccaggc
tatggtaatggatctttgtcgagaaacgagctgcaggagcaatttccacgacctgacggc
gggagccccagggatgccgagcacctaaactag
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integrated database retrieval system
