Zingiber officinale (ginger): 121980379
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Entry
121980379 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121980379
04121 Ubiquitin system [BR:
zof04121
]
121980379
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121980379
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
121980379
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121980379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
Zn_ribbon_19
Prok-RING_1
zf-C3HC4_3
zf-Nse
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
121980379
NCBI-ProteinID:
XP_042388324
LinkDB
All DBs
Position
5A:29860194..29862106
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AA seq
390 aa
AA seq
DB search
MSMETASPQWCRRCCRFISVGPDAVVCPDCGGGFMNAYGLFHPSFAVAAEPRRRRFPSPV
IDSAAADGRPHQHSGIRFRSNSRPSTSDRSPFNPLIVLLGPGGSRRDADRDTINSFEMYH
YDGTGSGLRPLPENMSDFLIGSGFERILDRLSQMETNGAGSRHVFGHPPASKSAVESMPT
VEIADLHVTLEFHCAVCKDPFELGAEALEMPCKHIYHQDCILPWLALRNSCPVCRHEMPT
DVQQPDADEDASLSGNEDEMVGLTIWRLPGGGFAVGRFTGDRRAAEGEFPAVYTEMDGGF
NTNGAPRRIAWSSRESRSQHHRGFSQAFRSVLSFFRRLRSSTPISSTRLNPNSQSFSNPS
VRHRRSSMFRRSPRSRSTNSTRNGGTVDSP
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggagacggcttcgccgcaatggtgtcgtcgctgctgtcgcttcatctccgtt
gggccggacgccgtcgtttgcccggattgcggtggcggcttcatgaatgcatatggcctt
ttccatccctcctttgcggtggctgccgagcctcgccgtcgacgcttcccctccccggtg
atcgactctgccgctgccgacgggcggccacaccagcactcggggattaggttccgtagt
aacagtcgtccgtccacgagcgaccgatctcctttcaatcccctcatcgttcttctcggt
cccggaggctcacgacgcgatgcggatcgggataccatcaacagttttgagatgtaccac
tacgacggcacagggtcgggcctccgccccttgccagaaaacatgtcggatttcttgata
ggctccgggtttgagaggatactcgatcgcctttctcagatggagaccaatggagcaggc
agcaggcatgtgttcggtcacccgcctgcttcaaagtctgccgtcgagtctatgcccaca
gtcgaaattgctgaccttcatgttaccctggaattccattgcgccgtctgcaaggatccc
ttcgagctcggagctgaggccctcgagatgccctgcaagcacatctaccatcaagattgc
atcttgccatggctcgccctaagaaattcctgtccagtttgccggcatgagatgccgacg
gatgtgcagcaaccagatgcggacgaagacgcctccttgtctgggaacgaggacgagatg
gtcgggcttaccatatggaggcttccgggaggtgggtttgccgtaggcagattcacaggg
gacaggagagctgctgaaggggagtttccagccgtttacacagagatggatggcggattc
aatactaatggggcaccaagaaggatagcatggtcctcgagagagagccgatcacagcat
catcgaggattcagtcaggcattccgcagtgtgctttcattcttcaggcgtttgaggtct
tctactccgatatcttcaaccaggttaaatcccaattcccaatctttctcaaacccttct
gttagacacaggagatcttccatgttcaggaggagtccgagaagccgcagcacaaattcg
acacgaaatggtggaactgtcgattcaccatga
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