Zingiber officinale (ginger): 121980648
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Entry
121980648 CDS
T08725
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121980648
09124 Replication and repair
03420 Nucleotide excision repair
121980648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121980648
03400 DNA repair and recombination proteins [BR:
zof03400
]
121980648
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121980648
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121980648
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121980648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
121980648
NCBI-ProteinID:
XP_042388706
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All DBs
Position
5A:complement(77454620..77464003)
Genome browser
AA seq
760 aa
AA seq
DB search
MAGGDGERGRPMKKLKTISSSSKATRIMEEEDFDDYGNHFDDDTRDGVKSEREIKKRDFT
QLELKPDHVNRPLWACGDGRIILETFSPLYKQAYDFLMAIAEPVCRPESMHEYNLTPHSL
YAAVSVGLETETIISVMNKLSKSKLPSEIIDFIRGSTANYGKVKLVLKKNRYFVESPFPE
VLKRLRKDKVISSAQIKFEDSHGVHEDLLNQAELATAIEKETHSFEIDPSQVENVKQRCL
PNALNYPMLEEYDYRNDTVNPDLNIALKPQAQQRPYQQISLSKMFRNGRARSGIIVLPCG
AGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIEDENISCFTSDNKEKFRGS
AGVVVTTYNMIAFGGKRSKDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHC
KLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKEGFIANVQCAEVWCPMTKEFFAEY
LKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKVIVFADNLFALTAYAMKLQKPMI
YGATSHSERTRILEAFKSSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRL
GRILRAKGRLQDRMAGGKEVYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITILP
PPNLGAELSYHSLDEQTELLNKVLNAGDDMVGPEQLLEDSGDITAIKRKRSAGSMSAFSG
ANGMVYMEYTTGKNKQGRGSKSKPKDPSKRHALFKKRFAP
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtggcgacggagaaagaggtcgcccgatgaagaagctgaagaccatctcttcc
tcgtctaaggcaactcgtattatggaagaagaggatttcgatgactatgggaatcatttc
gacgatgatacccgagatggtgttaagagtgagagggagattaagaagagggatttcacc
caactggagctgaagcctgatcacgtgaacaggcctctatgggcctgcggtgatggccgg
atcattctggaaacgttctcgcctctctacaagcaagcctacgatttcctcatggctatc
gccgaacctgtctgcagaccggaatcaatgcacgagtataatttgacgccacactctctc
tatgctgcggtttctgtgggtctggagactgagaccattattagtgtcatgaacaagctg
tcgaaatctaagttgccatctgagataatagactttatccgtggatcgactgctaattat
ggaaaagttaagcttgtgttgaaaaagaatcgatattttgttgagtcaccatttccagag
gtattgaagagattgcgcaaggacaaagttatatcgagcgctcagattaaatttgaggat
tcacacggtgttcatgaagacttattgaatcaggcggagttagctactgcaatagagaag
gaaactcattcatttgagatagacccttctcaggtggaaaatgtgaagcaacgatgtttg
cctaatgctctaaactatcctatgctcgaggaatatgactatcgaaatgatacagtgaac
cctgatttgaatatagcattgaaacctcaagcacaacaaagaccatatcaacaaataagt
ctcagtaagatgtttcgcaatggacgagctaggtctggtatcattgtgttaccttgtggc
gctgggaagtctctggtgggtgtttctgctgcttgccgcgtaaaaaagagttgcctttgc
ttggctacaaacgccgtttctgtggatcaatgggcttttcagtttaagctctggtccacc
atagaagatgagaacataagttgcttcacatctgataataaagaaaaatttcgtgggtcg
gctggtgtagttgtgaccacctacaacatgatagcttttggtgggaagagatctaaggat
tctgagaaaatcattgaagaaatacgaaatagagaatggggactactacttatggatgag
gttcatgttgttccagcacatatgtttcgtaaagtaattagcatcaccaaatctcattgc
aaacttggacttactgcaacacttgtgagagaagatgaacgaatcacagacttgaatttt
cttattggaccaaagctgtatgaggcaaactggttggatttggtaaaagaaggatttatt
gctaatgtccagtgtgctgaagtctggtgtcctatgaccaaggagttttttgcagaatat
ttgaagaaagagaattcaaagaaaaaacaggcactatatgtgatgaatccgaataagttc
agagcttgtgaatttcttattcgctttcatgagcagcaacgtggagataaagttatagtt
tttgctgataatttgtttgcattgactgcatatgcaatgaagctccaaaagcccatgatc
tatggtgcaaccagccatagtgagagaactaggattcttgaagctttcaagagtagtcgt
gatgttaatacaatcttcttgtccaaggttggtgacaactcaattgatattccagaagcc
aatgtgataatacagatttcatcccatgctggttcacgacgtcaggaagctcaacgtttg
ggtcgtattcttagggctaaggggcgactgcaagatagaatggcaggtggaaaagaagta
tacaatgctttcttctattctcttgtttccacggatactcaggaaatgtattactctact
aaaaggcagcaattcttaattgatcaagggtatagcttcaaggtaatcactatcttgccg
cctcctaatttaggcgctgaactcagttatcatagccttgatgagcaaaccgaactactg
aacaaggtgctgaatgctggtgacgacatggtgggtccggagcagttgctggaggattca
ggtgatataacagctatcaagcgcaagcgttctgcgggctcaatgagtgctttctctgga
gcaaatggaatggtctatatggaatacaccactgggaagaacaaacaaggacgtggttcg
aaatcgaaaccaaaggacccgtcaaagagacacgcgttgttcaaaaagcgatttgctcct
tga
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