Zingiber officinale (ginger): 121980753
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Entry
121980753 CDS
T08725
Name
(RefSeq) syndetin-like
KO
K23288
syndetin
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121980753
Membrane trafficking [BR:
zof04131
]
Protein recycling
Others
EARP complex
121980753
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
DUF2533
Motif
Other DBs
NCBI-GeneID:
121980753
NCBI-ProteinID:
XP_042388882
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Position
5A:complement(82398194..82422341)
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AA seq
1124 aa
AA seq
DB search
MRPDQAGNPPSFLDGDRAISEFETPGPLLFLPLLFIQGGGMDLSKVGEKIFSSVRSARSL
GLLPSSSDRPEVPARAAAAAAIAHALAAIPPYQKVNRLSSSEESASIYNSKSIDDLEEEF
YEEDFDPVGYVLENFPDEELDSTYFDKKSTLRLAQLDKISEQLSHHVMEHHEEMVKGMQL
VTELEQDLKVANVICMNGRRHLTSSINEVSRDLVVNKMSRKKQALLDMIPILTELRRSID
MQMDLEVLVENGKYCQAFQLLPEYLQILDNYSELSVIQEMGHGVEAWLARTIQKLDSHLL
GVCRAFEEESYVTAIDAYALMGDIAGLGEKIQSFFMQEVLSQTHSVLKDMISEEIGNPSL
TSRLTYSDLCIQIPESQFRQCLLRTLDVLFRLMCSYYSIMSFHSQEKVLGSQKPDIDLKK
SSTSHDLEGSIPDSMSIVPTHSIEHIDYAPMSSNQMDGIIVPNNVTTTSPDTMPQSSCSS
TMERPTNLSEAGVATSACDSPFYQLRKDATAFVSHTLGKGRKNLWQLTSSRVSVLLSSSA
ICSTSTYQFLRNYEDLNIFILAGEAFCGTKAVEFRQKLKTTCESYLASFHRQNVYALKMI
LEKESWVKMSMNTLQVINLAGLVGDGAPLIAPSPGHASMSMLELKRTNDSVDSGKQNGFA
YWLQMENPFYSKLTFVSKESPRSILSLNGSTSNLGQGRVGISHNDDISPKSYYNDQANGS
SSVMEDENEDLLADFIDEDSQLPSRISKPIHNRTKSSTWSSEEISAQTASSLYLLRLLDK
YARLMQKLEIINVEFFKGICQLFGIFYHFIFETFGQPEASQSGKPIPDFLPSRIKTALSK
IMQDCDQWIRTQNILHSISSPIPMSPTFAQMDVTPTAPPNTFFGHAPNTSFGLKERCSSV
ETISLVAQVLHKSKAHIHSMLSQHNACVIEEFFIHLVDAVPDLTEYIHRATARMLLHING
YADKIANAKWEVKELGFEHNGYVDLLLGEFKHYKTRLMHGGISKEVQDLLLEYGLENVAE
TLIEGLSRVKRCTDEGRVLMSLDLQVLINGLQHFVTINVKPKLQIVETFIKAYYLPETEY
VHWARTHPEFSKSQITGLVNLVATMKGWKRKTRLEILERIEAGN
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccagatcaggcaggcaatcctccatcgttcctcgacggagaccgcgcgatctcg
gagtttgagaccccagggcccctcctgttcctccccttgctcttcatccaggggggagga
atggatctctccaaggtcggggagaagatattcagctccgtgcgatccgctagatctctc
ggacttcttccctcctcctctgatcggcccgaggttcctgctagagcagcagctgcagct
gctattgctcatgctctcgctgccataccaccctatcaaaaagttaatagactatcaagc
tcagaagaatcagcatcaatttataatagcaaatctattgatgatcttgaggaggagttc
tatgaagaggattttgatccagttggatatgtcctggaaaactttccagatgaagaactt
gattctacctactttgataaaaagtcaacccttaggttggcacaacttgataagatatca
gagcagttgtcacatcatgtcatggagcaccatgaagagatggtgaagggaatgcagtta
gtgaccgagctggagcaagatttgaaagttgcgaatgtcatctgcatgaatgggcggcga
cacttaacttcatcaataaatgaggtttcaagagatcttgttgtcaataaaatgtcaaga
aagaaacaagcattactggatatgatcccaattcttacagaacttcgtcgttcaatagac
atgcagatggacctagaagttcttgttgaaaatggaaagtattgtcaggcatttcagttg
ttacctgagtatctgcaaattttagataattactctgagctttctgttattcaagagatg
ggacatggagttgaggcttggcttgctaggacaattcaaaagctagattcacatttgctg
ggtgtttgcagggcatttgaagaagaaagctatgtaactgcaattgatgcttatgccttg
atgggagatatagctggtcttggtgagaaaattcagagtttctttatgcaggaagttctc
tctcaaacacattctgtgttgaaagatatgatatcagaggaaattggaaatccttcgctg
acaagtagactcacttacagtgatctctgcattcagatacctgaatctcaatttcgtcag
tgtttgttgagaactttggatgtcttatttaggttaatgtgttcatattactctattatg
agctttcattcacaagaaaaggtcttaggttcccagaagcctgacattgatctgaagaaa
agtagcacatcacatgacttggaaggatctatacctgattcaatgtccattgttccaact
cactcaatcgagcatattgactatgcacctatgtcatctaaccagatggatggaattatt
gtgccaaacaatgtaaccaccacaagtccagataccatgccacaaagttcttgtagttct
acaatggaaaggccaactaatttaagtgaggctggggttgccacttcagcttgtgattct
cctttctaccagttgagaaaggatgcaacagcttttgtctctcacacattaggaaaaggg
agaaaaaatctgtggcaactgacttcaagtcgtgtctcagttttgctttcttcttctgct
atttgctcaaccagtacttaccaattcttacggaactacgaagatctcaatatttttatc
ttagctggtgaagcattctgtggcactaaggctgttgaattcaggcagaaattgaagact
acttgcgaaagttatttggcatcctttcaccgtcaaaatgtgtatgctcttaagatgatt
ctagaaaaagaatcgtgggtgaagatgtcaatgaacacgctacaagtaattaatttagct
ggtcttgttggtgatggggctccattgattgctccttctccaggtcatgcatccatgtct
atgcttgagttgaagagaactaatgattctgttgattctggcaaacagaatggatttgcc
tattggcttcagatggaaaatccattttattcaaagctgacatttgtctcaaaggaatca
ccacgatctatcttatcacttaatggatcaacctcaaatttaggccaaggacgtgttggt
atttcacacaatgatgatatatctccaaagagctattataatgatcaggctaatggaagt
agttctgtcatggaggatgagaatgaagatcttcttgccgactttattgatgaggatagt
cagttgcctagtcgcatatctaaacccatacataacagaacaaaatcctcaacctggagc
agtgaggaaatctcagcacagacagcgtcttcgctttatcttttaaggttgttggacaag
tatgctaggcttatgcagaaactagaaataatcaacgttgagtttttcaagggcatctgt
caattgtttggtatattttatcattttatatttgagacctttggtcagccagaagctagt
caaagtgggaaacccataccagattttctaccttctcgaattaaaacagctttgtcaaag
attatgcaagattgtgatcagtggattagaacacagaacatattacattcaatttcatca
cctatcccaatgagtccaacattcgcacagatggatgtaacgcctacagcacctcctaac
acgttttttgggcatgcacctaacacttcatttggattaaaggaacgatgttcttctgtt
gaaaccatatcattagttgctcaagtactgcataaatcgaaggctcatatccattctatg
ttatcacagcacaatgcttgtgtaatagaagagtttttcatccatctggtggatgcagtt
cctgatctgaccgagtatattcacagggcaacagctcgtatgcttctccatattaatggg
tacgctgataagattgccaatgcaaaatgggaggtgaaggagcttggttttgagcacaat
gggtatgttgacttgttattgggagaattcaaacattataaaacaaggctcatgcatggt
gggatttcaaaggaggttcaagatctcctcttggaatacggacttgaaaatgtcgcagag
acacttattgaaggtctatcacgtgttaaaagatgcacagatgaaggaagagttttaatg
tcactcgaccttcaggtcttgattaatggactacaacattttgtcaccataaatgtgaag
ccaaagttgcagatagtggaaacatttatcaaggcctactatctcccagagactgaatat
gttcactgggctcgcactcatccggaattcagtaaatctcagataactggactcgtaaat
ctcgttgccaccatgaaaggttggaagaggaagacaaggttggaaatcctagaaaggatc
gaagcaggcaattaa
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