KEGG   Zingiber officinale (ginger): 121980814
Entry
121980814         CDS       T08725                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03018  RNA degradation
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121980814
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121980814
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    121980814
   03041 Spliceosome [BR:zof03041]
    121980814
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     121980814
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     121980814
Spliceosome [BR:zof03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    121980814
SSDB
Motif
Pfam: LSM Hfq DUF150_C
Other DBs
NCBI-GeneID: 121980814
NCBI-ProteinID: XP_042388970
LinkDB
Position
5A:complement(84738182..84744828)
AA seq 99 aa
MSGRKETVLDLAKFIDKGVQVKLTGGRQVMGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
TDQTRRLGLIICRGTAVMLVSPTDGTEEIQNPFIQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcaggcaggaaggaaactgttctagatttggcaaagttcattgacaagggtgtccaa
gtcaagctaacaggaggaagacaagtgatggggactctaaaaggctacgatcagctgctt
aacctggtgctagatgaagctatagaatttcttagagatcctgatgatccactgaagact
acagaccagactagacgtcttggccttataatatgtaggggaactgctgtaatgcttgtg
tcaccaactgacggaacagaggaaattcaaaaccccttcatccagccagatggagcttaa

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