Zingiber officinale (ginger): 121980943
Help
Entry
121980943 CDS
T08725
Name
(RefSeq) zinc finger CCCH domain-containing protein 24-like
KO
K15332
tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121980943
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
121980943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
zf-CCCH
MTS
Ubie_methyltran
RRM_1
Methyltransf_4
Methyltransf_15
Methyltransf_11
Ish1
PCMT
PrmA
AviRa
zf-CCCH_2
zf_CCCH_4
Motif
Other DBs
NCBI-GeneID:
121980943
NCBI-ProteinID:
XP_042389161
LinkDB
All DBs
Position
5A:complement(90147107..90156093)
Genome browser
AA seq
837 aa
AA seq
DB search
MASMEMTALAASPSDELEQASTEPTVAGTVNDALDIDGFGGKRKRDEEAEEKGGEEESAR
DAGDRVPYWKTSLCSFYRRKSGREGCSHGDSCRYAHGEAELRPRPDKTWDPTSERAKKIL
RDGNDGNEDSLAPEVQGMAVDLTSLDKCLIGLPRKWSSDNLKSFLDGQGILCKTAKKKKG
MSVGFVTFDNTEQLKRAIEVLNENATSGQKQIKVADANRRSYQTKVEKQIPPNQNKGQVV
NGELCTNYAMPSYSFEADDSVGKDTTIGEGFASVTKTARDVVTPSADIPYSDQLEQKMKT
LTQTLKKLTRNARKACPPSVSLPEWIMKSREAGGLPCKLEGILESPLTNGYRNKCEFSVG
YSLHGKPTVGFMVGSFREGITAIEEPINCPNVSRISYEFALAFQEFLQSSALPVWNRIEN
KGFWRQFTVREGRKSSQVTVNKVAEIEIAEVMLIIQVCSTDVDEEVMKNDFQRMVQTLVL
GAAACSPPLPLTVIVVQDYQGISNAAPADCPLIPLMIPKVEPIPSDDKHAIEARIHDYIS
NLCFSISPTAFFQVNTLAAERLYSLAGDWADLNRDTLLFDICCGTGTIGLTLAHRVGMVV
GIEMNASAVSDAQRNAMINGITNCRFVCSKAEDIMGALLKEYLDVPEHNGSISGISCKGV
EGSVEEKIKDDSVASEGPDEDLNDSSEGNCSTDHSDVTRNDQVCKTMNLHICTSKDKDGA
DIPQFKNVVAIVDPPRVGLHPVVIKSLRTHPRIRRLVYISCNPESLVANAIELCTPTAGE
PEKAKGNRGWRKMSSAGLARHRTKSMPKSEPFRPVRVMAVDMFPHTPHCEMVMLLER
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatggagatgacggcgctcgcggcttctcccagcgacgaactcgagcaggcc
agcaccgagccgaccgttgccggaaccgttaacgatgcgttggatattgacggatttggc
ggaaagcgaaagagggacgaggaggcggaggagaaaggaggggaagaagaaagtgctcgg
gacgccggcgatagggtcccatactggaaaacgagtctttgctcgttttacagaaggaag
tccggtcgagaggggtgtagccatggagactcttgccgctacgcacacggcgaggcggag
ctccgccctcgcccggataagacgtgggacccgacctcagagcgggccaagaagatcctt
agggatggcaatgatggaaatgaggattctttggcgcccgaggtccaaggcatggcagtt
gatcttacttcgcttgataaatgcctcattggtctgcccaggaaatggtcatcagacaac
ctgaagagcttcctcgatggtcagggaattctctgtaaaacagctaaaaagaagaagggt
atgagtgtgggttttgtgacatttgacaatacggaacagctaaaaagggcaattgaggta
ttgaatgagaacgctacatctgggcaaaaacaaataaaagttgcagatgcaaaccgcagg
tcttatcaaacgaaagttgaaaaacaaatccctccaaatcaaaataaagggcaagttgtg
aatggggaactatgcactaactatgccatgccttcatactcatttgaggctgatgattca
gttggaaaagacactaccataggggaaggttttgcttcagtgacaaaaactgcacgtgat
gtggttactccatcggctgatataccgtatagtgatcagttggaacagaagatgaaaact
cttactcaaacacttaaaaaacttacccggaatgcacgcaaagcttgtcctccctctgtt
tctttgccagaatggataatgaaatctagggaagctggtggtcttccttgcaaacttgag
ggcatattggaatcaccgttaaccaatgggtatcggaacaaatgcgagttttcagttggt
tactcattgcatggtaaaccaactgttggctttatggttggaagtttcagggaggggata
acagcaattgaagaacctatcaactgcccaaatgtgtctagaatatcctatgaatttgct
ttggcctttcaggagtttctacagtcatcagcattgcctgtatggaacagaattgagaat
aaaggattttggcgtcagtttacagttcgggaaggaaggaaatccagccaggtgaccgtt
aacaaagttgcagaaattgagattgcagaggtcatgttaataattcaggtttgttcaact
gatgtggatgaagaagtaatgaaaaatgactttcagagaatggtccagacacttgtactt
ggagcagctgcttgttctcctccacttcctctcacagtaatagttgtccaggattatcaa
gggatatcaaatgccgctcctgctgattgccctttgatcccattgatgataccaaaagta
gaaccaattccatcagatgataaacatgcaattgaagcaagaattcatgattatataagc
aatctctgcttctccatatcgcccacagcttttttccaagttaacactcttgctgcagag
agattgtactcactggctggtgattgggctgatctcaatagagacacattactttttgac
atatgctgtgggacaggaacaattggactcaccttagcccaccgtgttggcatggttgtc
ggtattgaaatgaatgcatcagcagtttcagatgcacaaagaaatgcaatgattaatgga
ataacgaattgcaggtttgtctgcagcaaggcagaggatataatgggggccttactgaag
gagtatcttgatgttccagagcataatggcagtatttctgggatcagttgtaaaggtgta
gaaggctctgttgaggaaaaaataaaggatgattcagtggcatctgaaggtccagatgag
gatttaaatgactcttctgaaggaaactgctcaacagatcatagcgatgttaccaggaat
gatcaagtttgcaaaacgatgaatctgcacatctgcacttctaaagacaaggatggagca
gatatacctcaatttaagaatgttgttgctattgttgatccaccacgagttggacttcat
cctgttgtgatcaaatctctaaggactcatccacgcataaggcgacttgtctatatctct
tgtaatcccgaaagtttggtcgctaatgccattgagctttgcactccaactgccggtgag
ccagagaaagcaaaaggcaatagaggatggcggaaaatgagcagtgccggccttgcccgg
catcggactaaatcaatgcccaagtcagagccattccgcccagtcagggtgatggcagtg
gatatgtttccgcatactccccactgtgagatggtgatgcttctcgagcgctaa
DBGET
integrated database retrieval system
