Zingiber officinale (ginger): 121980961
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Entry
121980961 CDS
T08725
Name
(RefSeq) sister chromatid cohesion protein SCC2-like isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
121980961
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
121980961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
INTS1_R4
PHD_2
Motif
Other DBs
NCBI-GeneID:
121980961
NCBI-ProteinID:
XP_042389184
LinkDB
All DBs
Position
5A:complement(91175517..91208677)
Genome browser
AA seq
1750 aa
AA seq
DB search
MELNQDLRFERYCRLVNTTHSEIAPSLSLPSLPPCFGSVDQKIGLSDALAGSRAGDVPEI
IAHARTISELLSNCDVGYLNLKEDGAVGTDVPDDHSILYQEVMKFNHDAFKCFRPGPSQE
WRSSNQTLEKKPIEQKVVKLKRVIETDSDDRSEKNLVNEPPSVTSRKPKMIRKETDSVPL
TAGPDTLDQQGIVGSFCEMVEDFCSKAEFPDDLELADEQSLPLSEIKTLVNQIMSIRSKK
VLHLVPLDILVRLLGVFDRQIQCAQGVSSDGNDNDNPDVDAANLVLCALESSHAALAIMA
HQDMPKQLYREEVIERILDFSRHQIMEIIAACNPLQNLAKPSDNDFFDGEDADDDDINNN
SSAKKRRYSRSFNMRKSAGSKISTPVQSVLQKLCTILGFLKDLLSVERLSDSCILQLVKT
SFSTFLAENVQLLQLKCINLISGVYASYTIHRSFLIDETLQLLRKLQFSKRAIRTYLLPD
EEQKQIQMITALLIQMVQFSGNLPESLKSASNWNVLLDTSSDSSTPAKCYEDATKTCCLF
WTSFLQRLTNGKSQDASESKIILENLVMDLLTTLNLPEYPASASLLEVLCVLLLENAGLK
CKDISARCMAVDFLGAIAAKLKRDAVTSSSDKFWILQQLVDRNGSVFNGKNDACSVCLKG
RGANIICHICKRCFHSDCLGIAGQEMLLRDWACHICLCKKQLIALHSYCKMQNKDNAKQN
IGLTSTTSGDTDSVTGSEVIQQILLNYMQQNGSEDDVNLFTRWFHLCLWYKDDSQSRENV
TYHLARLKSRAILRDSTGSLFLSRDGAKRICLALGQNVSFARGFDKILYLLLVSLRENSP
VLRAKALRAVSAIVEADPKVLCYERVQTAVEGRFCDSAISVREAALELVGRHIASHPEVG
LKYYEKVAERIKDTGVSVRKRAIKIIRDLCISQSNFPEATQAFIVILSRVTDEESSVQDI
VCKTFYELWFEEPTGSQKHLIADGSCVPLDIAKKTEQIVDMLRNMPNNHHLVTIIRRNLT
LDFLPQSAKATGINASLASVRKRCELICKRLLERILQVEEENSDKEEGGALPYVLALHSF
CVVNPALCVPSTDQSQFVTTLQPYLKNQVENKAASQLLESILFIVNAVLPLLRKPPQSVI
EELEQDLKHMIVRHSFLTVVHACIKCLCSLSKIAGKGANVVEYLILVFFKRLQDSSSDNT
QALVRSLFCLGLLLRYSSDLEFRMDTQHIHIHKSLLSLKKYLAMEDIVLKVRALQALGNV
LIARPEYMLENDVGKILRATLDTTVDPRLKTQALQNLYEYLLDAETKFSSDTENNNAIPH
FEGSRNAVPVAAGAGDTNICGGIIQLYWNNILEICLDVDEQIRQTALKILEVVLRQGLVH
PITCVPCLIALEIDPLEVNSKLAHHLLMNMNEKYPSFFESRLGDGLQMSFKFVQCIANTH
NLISGEKGKLDRNPIAFVRPGISRIYRLIRANRISRNKFIHSIVKKFETGGGNYLPISFL
VYCTEILASLPFTCPDEPLYLIYDINRIIQVRAGALEANMKAWSSFLQHQNSVESATTNE
NLDLNANSCWQKTPQHSLEMEDKMSNSHAISEEDIHKIQADCHEAIALQLLLKLKRHLKI
TYGLNDARCQAFSLKDPPKPGETISRQNVPFSAGDTQLSLPTSYQAMIQKYQDFKVALRE
DTIDYSIYSASIKKKRPTPRSSKGGKTANQRRTNQDDDEDDDEDWTGGPRMLDFSNQSNG
VRITRQRVQV
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggagctcaaccaggacctacggttcgagcgctactgccgcctggtcaacactacccac
tccgagatcgctccctcattatccctgccctcgcttcccccgtgcttcgggtctgtagac
cagaagatcggcctctccgacgcgctcgctgggtcccgagccggcgacgtcccggagatt
attgcgcacgctagaacgatctccgagctacttagtaactgcgacgtgggatatttaaat
ctcaaggaagatggagccgttggtactgatgtcccggacgaccattcgattctttatcaa
gaggttatgaagtttaatcacgatgcatttaagtgttttcgtccaggtccttctcaggag
tggagaagttctaatcaaacacttgaaaagaagccgattgaacagaaagttgtgaaattg
aaaagagttattgaaactgatagtgatgatcggtcagaaaaaaacttagtcaatgagcca
ccttctgttacctcaaggaaacctaaaatgattaggaaagaaactgattcagttccatta
acagcaggcccagatactctggaccaacaaggtattgttggaagcttctgtgagatggta
gaagatttctgtagcaaggcagaatttcctgatgatttagaattagcagatgagcagtct
ctgcctctttctgagatcaaaacacttgtgaaccaaatcatgtctattcgttcaaagaaa
gtcctgcacttggttccacttgacattcttgtgagacttttaggcgtttttgatcgccaa
atacaatgtgcacaaggcgtgtccagtgatggaaatgacaatgacaatcctgatgttgat
gctgcaaatcttgtcctatgtgctctcgagtcttcacatgcagcactggcaattatggcc
caccaagatatgccaaagcagttatatagagaagaagtgattgaaagaattcttgatttc
tcaagacatcaaatcatggaaatcatagctgcatgcaatccgctgcagaatcttgccaaa
ccaagtgataatgatttctttgatggtgaggatgctgatgatgatgatataaataataat
tcatcagctaaaaaaaggcgatatagtaggagttttaatatgagaaagtctgcagggagc
aaaatttctactccagtgcagtctgtccttcaaaaactttgcaccattctaggatttctc
aaagatctattgtctgtggagcggctatcagatagttgtattctacagctggtcaagact
agtttttctacctttttggcagagaacgtccaacttttgcaactaaagtgtattaatttg
atttctggggtgtatgcgtcatacacaatacaccggagttttttgatagatgaaacactg
cagcttcttcgaaagttacaattctctaagcgggccattagaacatatcttctaccagat
gaagagcaaaagcagattcagatgataacagctttgttgattcaaatggtacaatttagt
ggcaaccttccagagagtttgaagtcagcatcaaactggaatgttcttctcgatacttca
tctgattcaagtaccccagctaaatgttatgaagatgcaaccaaaacctgttgtcttttc
tggaccagttttcttcagagactaactaatggaaaatctcaggatgcctcagaatcaaag
ataatcttagagaacctagtcatggatctacttacaacattgaacttacctgagtatcct
gcttctgcttcattattggaggttttgtgtgtcttgctgcttgagaatgctggtttgaaa
tgcaaagacatttcagcacgttgcatggctgttgactttctgggagctattgcagcaaag
ctgaaacgcgatgctgtgactagcagcagcgataaattctggattctacaacagctagtt
gatcgaaatggatctgtctttaatggcaagaatgatgcatgctctgtttgcttaaaaggg
aggggtgcaaacatcatctgtcatatttgtaagagatgttttcattctgattgcttggga
attgctggacaagagatgctgcttcgagattgggcttgtcacatttgtctttgcaagaag
cagctcattgctttgcattcatattgcaagatgcagaacaaggataatgctaaacaaaac
attggtttgacaagcactacttctggagatacggattcagtcactggatcagaagtcatc
caacaaattcttttgaattatatgcaacaaaatggctcagaagatgatgtgaatctgttt
actcgctggttccatctgtgcttgtggtacaaggatgattctcaatctcgagaaaatgtt
acttaccatctcgctagactaaagtctagagccattttgcgtgactctactggttcttta
tttttgtcaagagatggggctaaaagaatatgcttagcgcttgggcaaaatgtttctttc
gctcggggattcgacaaaattctttatttgcttctggtaagcttgagggagaactctcca
gttttacgagccaaggcattgagagcagtcagtgctatcgttgaagctgatcctaaggtt
ttgtgttatgaacgtgtccaaactgctgttgaaggacggttttgtgattctgcaatttct
gttcgggaagctgctcttgaattggttggcagacatattgcttctcatcctgaagttggt
ttgaagtactatgaaaaagttgcagaacggataaaagacactggagttagtgtgcggaag
cgtgctattaagatcatccgtgatttgtgtatctctcagtctaactttcctgaagcgaca
caagcttttattgtgatactttctcgtgttactgatgaggaatcaagtgtacaggacata
gtttgcaaaacattctatgaactttggtttgaggagccaacaggaagtcagaagcacttg
atagctgacggtagctgtgtaccattggatatagctaagaagactgagcaaattgttgat
atgctgagaaatatgcctaataatcatcatcttgttacaattataaggcgtaatctgacc
cttgattttctcccacaatcggctaaagctactggaattaatgcttctttagcatctgtc
cgtaaacgatgtgagctcatttgtaaacgtctgttagaaagaatcttgcaggtagaagag
gagaatagtgataaagaggagggcggtgcactaccatatgtgcttgctttgcactcgttt
tgtgttgtaaacccagcactttgtgtgccatctacagatcaatctcaatttgttacaaca
cttcaaccgtatcttaagaatcaggttgagaataaagcagcctcacagcttcttgagagt
atactattcatagtcaatgctgtccttcccttgcttcggaagccaccacagagcgttatt
gaggaacttgagcaggacctgaaacacatgattgttcgccactctttcctgacagttgtt
catgcttgtatcaagtgcctttgttcgcttagcaaaattgcaggcaaaggtgcaaatgtg
gttgaatatttgattctcgtcttcttcaagcgtctgcaagattccagttcagataacaca
caggcattggttcgatcacttttctgccttgggttgcttctaaggtacagcagtgatcta
gaatttagaatggatactcaacatattcatattcacaagagtctcttgtcgcttaaaaaa
tatcttgctatggaggacattgtattaaaggttcgagctttacaggcactgggaaatgta
ttgattgctaggcctgagtacatgttggaaaatgatgttgggaaaatattgagggcaaca
ttggacactactgttgatcccaggctgaagacacaagcactgcaaaacctatatgaatat
cttcttgatgcggaaaccaaattcagttcagatactgagaacaacaatgcaattccacat
tttgaaggttctagaaatgcagtgcctgtagctgcaggtgcaggtgatactaatatttgc
ggaggaatcattcaactttactggaacaacattcttgaaatttgcttggatgttgatgag
caaattcgtcagacagctctcaagattctggaagttgttctacgtcaaggtctggtgcat
cctattacatgtgttccatgccttatagcacttgaaattgatcccctagaagtaaattca
aaattggctcatcacttgcttatgaacatgaatgaaaagtacccttctttctttgaaagt
cgtttgggtgatggccttcagatgtcatttaaatttgttcaatgcatagcaaatactcat
aatttaatctcaggagaaaaaggcaagttggataggaacccaatagcatttgtcaggcca
ggtatatctcgaatatataggcttattcgagcaaatcgtatatcaaggaacaagtttatt
cactcaatagtgaaaaaatttgagactggtggtgggaattatttaccaattagctttctt
gtgtattgtacagagattcttgcatctctcccattcacatgtcctgatgagcccctttac
ttgatatatgatataaatagaataatacaagttagggcaggtgcattggaagcaaacatg
aaagcctggagttctttcttgcagcaccagaactcggtcgagagtgcaacaactaatgaa
aatcttgatctgaatgctaattcttgttggcaaaagacacctcagcacagtttggagatg
gaggacaagatgtcaaactcacatgcaatttcagaagaggacattcataagattcaggcg
gattgtcacgaggcaattgctctacagctccttttgaagttgaaaagacacttgaaaatt
acctatggactgaatgatgctcgatgccaggcattttctttaaaggaccctccaaagcct
ggagagacaatttctaggcaaaatgttcctttcagtgctggtgacacccaacttagtctg
ccaacctcctatcaagctatgattcaaaagtatcaggacttcaaggtggctttgagagaa
gacaccatagactattccatatactctgctagtatcaaaaagaagcggcccactccaaga
agctcaaaaggtggaaaaactgctaaccagagaagaaccaaccaagatgatgatgaagat
gatgatgaagactggacaggcggaccacgcatgcttgatttcagtaaccagagtaacggc
gttaggataaccagacaacgagtgcaggtgtag
DBGET
integrated database retrieval system
