Zingiber officinale (ginger): 121980987
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Entry
121980987 CDS
T08725
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121980987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121980987
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121980987
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121980987
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
121980987
NCBI-ProteinID:
XP_042389213
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Position
5A:92665130..92677692
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AA seq
873 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGDLETQIDHFEAEMEGLSVKKGKTRPPRLTHLETSITRHKA
HVMKLELILRLLDNDELSPDQVNDVKDFLEDYVERNQEDFDEFSDVDELYVSLPLDKVEA
LEDLVSLGPSSLTKIALSSAESQHTFQDQGEDAVPQESNSDATSKTLPSTVSLAPTLHPA
NSSGVSVVPTSAVSASIPVHPSTSAPAASVLLSGPPSAKSVTESSVAVSLPLPSANSVRE
EDTTFPGRRPSPAIPEIVGKGISRGISNPASISTNMAFSSASAISENVTLGSVPALSDIS
KPNSLNVDERIGSELAQPLVSPINNRILLQSLPKTNDGTSSNDSNNVGETPISGGRVFSP
SLVPGVQWRAQGAAFQNANESGQFRGRPEIAPDQREKFLQRLQQVQQGHSNLLNVSHISG
ANHKQFTTQQQSSLLQQFSPQNALVAPHITLGLGVHGAGFGSVSPQQQPTILQQSSQHPA
VSSGMKDGDAAHANANAEDQQQQWHNMSEDLITDPISSPSLNKNIGDDDLKTSYTGTGPA
SAAESSQLSRENELGQPLQAGQSSASLGVIGRRSALDLGAIGDNINGLAGNSGGMHDQIY
NLQMLEAAYYKLPQSRDSERAKTYVPRHPAITPASYPQTQAPIIDNPAFWERSGLDPMGT
DALFFAFYYQQNTPQQYLAARELKRQSWRFHKKFNTWFQRHEEPKVTNDNFERGNYVYFD
FHIANDGSQHGWCQRIKTDFTFEYDFLEDELVV
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgagcaggaagctgcagggcgagatcgatcgagtcctgaagaaggtacaggaa
ggcgtcgacgtcttcgatagcatttggaacaaggtttacgatacggagaatgtgaaccag
aaggagaagttcgaggcggacttgaagaaggaaatcaagaagctgcagcggtatcgtgat
cagatcaagacatggattcagtcgagcgagataaaggataaaaaggttagtgcctcttat
gagcaggctctcatggatgctcgcaagctcattgaacgtgaaatggaaagattcaaggtt
tgcgaaaaagagacaaagacaaaagcattttccaaggaaggtttaggtcagcaaccgaag
acagatccaaaagagaaggccaaatcagaaacgagggactggctcaacaatgtggttgga
gatttggagactcaaattgaccactttgaagctgaaatggaagggctttctgtcaagaaa
gggaaaacaaggccacctcgcctgacacatctggagacatccatcaccaggcacaaagct
catgttatgaagttggagttgattttgagactgttggacaatgatgagttgagtcctgat
caggttaatgatgtcaaagactttcttgaagattatgttgaacgtaatcaggaggatttt
gatgaatttagtgacgttgatgaactttacgtctctctaccacttgataaggtagaagca
ctggaagatcttgtttcgcttggtccttccagtcttactaagatcgctttgtcatcggca
gagtcacaacacacatttcaggatcaaggtgaagatgcagttcctcaggaaagtaattct
gatgccacatcaaaaactctaccttcaaccgtgtctttggcaccaacactccatccagct
aatagttctggggtatctgtggtccctacttcagctgtgagtgctagcattcctgtacat
ccatccacttctgcaccagcagcttcagttttactttctggtccaccaagtgcaaaaagt
gttacagagagctctgttgctgtctctttgccccttccctcagccaactcagtgagggag
gaagatacaaccttccctgggcgaaggccttcaccagccatcccagaaattgtagggaaa
ggtattagcagagggatatctaaccctgcatcaatcagtactaacatggctttcagttca
gccagtgcaatatctgaaaatgttactcttggttctgttccagcattatctgatatatct
aagcctaactctttaaatgtcgatgagagaattggaagtgaacttgcacagccattggtt
tctcctataaataacagaatcctattgcaatcattgcccaaaacaaatgatggaactagt
tcaaatgattctaataatgtgggagagactcctatttcaggaggaagagtcttttcacct
tctttagtccctggagttcaatggagagctcaaggtgcagcttttcagaatgcaaatgaa
agtggtcaatttcgggggcgacctgagattgctcctgatcagagggagaaatttttacaa
aggctccaacaagtgcaacaaggtcacagtaaccttctcaatgtgtcacatatctctggt
gccaaccacaaacagtttactacacaacagcagagctcccttttgcaacagtttagtcct
caaaatgctcttgttgcacctcatattaccctaggacttggagttcacggagcaggtttt
ggttcagtttcaccacaacagcaaccaactattcttcagcagtcctctcaacaccctgca
gtatcaagtggaatgaaagatggagatgctgcacatgcaaatgcaaatgcagaagaccag
caacaacagtggcataatatgtcggaagacctgatcacagatcctatctcaagtcccagt
ctcaacaagaatataggtgatgatgatctgaagacatcatacacaggtacaggtcctgcc
tctgcggctgaaagtagccaattgtctagagagaatgaacttggccaaccattacaagct
ggtcaatcctcagccagccttggtgttattggtagaagaagtgcactagatcttggtgct
attggtgacaacattaatggcttagctgggaattctggtggaatgcatgatcaaatatat
aacttgcagatgcttgaagctgcatattataaactcccacagtctagggactcagaacgt
gcaaaaacctatgttcctaggcatcctgcaattacacctgctagttatcctcagactcaa
gcacccataatcgataatcctgccttttgggaacgatcgggtcttgatccaatgggcacc
gatgccttgttttttgcattttactatcaacagaacactcctcagcagtacttagctgct
cgagaattgaagaggcagtcctggagatttcacaagaaatttaatacatggtttcagcgg
catgaggagccaaaagtaactaatgataactttgaaagaggaaactatgtctactttgat
tttcatatcgccaatgatggctcacagcatggatggtgccagcggattaaaactgatttc
acctttgaatacgatttccttgaggatgaactcgtcgtatga
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