Zingiber officinale (ginger): 121981247
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Entry
121981247 CDS
T08725
Name
(RefSeq) TATA-box-binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121981247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
121981247
03021 Transcription machinery [BR:
zof03021
]
121981247
Transcription factors [BR:
zof03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
121981247
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121981247
RNA polymerase III system
TFIIIB
121981247
RNA polymerase I system
SL1/TIF-1B
121981247
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
DUF4295
Motif
Other DBs
NCBI-GeneID:
121981247
NCBI-ProteinID:
XP_042389609
LinkDB
All DBs
Position
5A:complement(101332394..101338272)
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AA seq
200 aa
AA seq
DB search
MAEQGLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV
IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG
SCDVKFPIRLEGLAYSHGAFCSYEPELFPGLIYRMRQPKIVLLIFVSGKIVITGAKVREE
TYTAFENIYPVLTEFRKNQQ
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacagggcctagaggggagccaacctgttgacctctccaaacacccttctggc
atcgttccgacacttcagaacattgtttcaactgttaatctggactgcaagttggatctt
aaagcaatagctctacaagctcgtaatgcagagtacaatccaaagcgttttgctgctgtt
attatgcgaataagagagccaaaaactactgcattgatatttgcatctggaaagatggta
tgtactggagcaaaaagcgaacagcaatcaaaactcgcggcaagaaagtatgctagaata
attcagaagcttggttttcctgccaagtttaaggatttcaagattcagaatattgtgggt
tcatgtgatgtcaaattcccaatcaggctagaaggcttagcatattctcatggtgccttt
tgcagttatgaaccagagctcttccctggtctgatctaccgaatgaggcaaccaaagatt
gtgctactgattttcgtatcaggaaaaattgttattactggagctaaggtgagagaagag
acttacacagctttcgaaaacatatatccagttctaacagagttcaggaaaaatcaacaa
tga
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