Zingiber officinale (ginger): 121981293
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Entry
121981293 CDS
T08725
Name
(RefSeq) cell division control protein 48 homolog D isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121981293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121981293
03009 Ribosome biogenesis [BR:
zof03009
]
121981293
04131 Membrane trafficking [BR:
zof04131
]
121981293
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121981293
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121981293
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121981293
Membrane trafficking [BR:
zof04131
]
SNARE
SNARE associated proteins
Others
121981293
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121981293
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121981293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_22
AAA_5
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
ATPase_2
AAA_28
AAA_18
Parvo_NS1
ABC_tran
IstB_IS21
Viral_helicase1
AAA_7
Vps4_C
NACHT
NB-ARC
AAA_24
DUF815
TsaE
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
121981293
NCBI-ProteinID:
XP_042389673
LinkDB
All DBs
Position
5A:complement(103566479..103574824)
Genome browser
AA seq
806 aa
AA seq
DB search
MVTKGEASSSDPKGKKDFSTAILEKKKAPNRLIVDEASNDDNSVVALHPETMEKLQLFRG
DTILLKGKKRRDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCQDVKYGKRV
HILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYC
IVAPDTEIFCEGEPIKREDEDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK
NAPSIIFIDEIDSIAPKRDKTGGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP
ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALC
TEAALQCIREKMDIIDLEDESIDAEILNSMSVTNEHFKTALGTSNPSALRETVVEVPNVS
WDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGG
AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRYQ
IFKACLRKSPVSKDVDLAVLAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKQSE
NPEAMEEDESEVAEIKAVHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSE
RSEAAVGNAPTDPFTANAADDDDLYS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggtgactaaaggcgaggcttcctcctccgatcccaagggaaagaaggattttagcacg
gcgattctggagaagaagaaggcgcctaaccggttgatcgtagatgaggctagtaacgat
gataattccgtggttgccttgcaccccgaaacaatggagaagctccagctctttcgtgga
gataccatactgttgaagggtaagaaaaggagggatactatctgcattgcacttgctgat
gatacatgtgatgagccaaaaatcaggatgaataaagttgtcagatcaaaccttagggtg
aggcttggggatgttgtctcagtacaccaatgccaagatgtcaagtatggaaagcgagtt
catatactgccaattgatgacacaattgaaggagttacaggaaacttgtttgatgcatat
ttgaaaccatacttcctggaagcatatcgtcctgttagaaaaggagatctcttccttgtc
aggggagggatgcggagtgttgagtttaaggttatagagactgatcctgcagaatattgt
attgttgctcctgacacagagatcttctgtgagggggagcctataaagagggaggatgaa
gacagacttgatgatgtgggttatgatgatgttggtggagttagaaaacaaatggctcag
ataagagagctagttgagctacctcttaggcaccctcaattgtttaagtcaattggtgtc
aagccaccaaaaggcatattattgtatggaccccctggttctgggaagacattgatagct
agagcagttgcaaatgagactggagctttctttttctgtattaatggccctgagatcatg
tcaaaacttgctggtgaaagtgagagcaatttgagaaaggcttttgaagaagctgagaaa
aatgcaccatcaattatttttatcgatgagattgattcaattgcacccaagagagacaaa
actggtggagaagttgagagacgtatagtttctcaacttttgacactaatggatggtctg
aaatctcgtgcccatgtaattgtcattggggctacaaacaggccaaatagcattgatcca
gctcttagacgatttggtaggttcgacagggaaattgatattggtgtcccagatgaagtt
ggacgcttggaggttctccgtattcataccaagaacatgaagctagctgaagatgttgat
ttagaaaggatttccaaggacactcatggctatgttggtgctgaccttgcagcactctgc
actgaagctgctctgcagtgtattcgtgaaaagatggacataattgacttggaggatgaa
tctattgatgctgagattctcaactccatgtctgttacaaatgaacatttcaagactgct
cttggaacaagcaatccatctgctttacgtgagacggtcgtcgaagtgcctaatgtcagc
tgggatgatattggtggtttggagaatgtcaaaagggaactgcaagagactgtgcaatac
ccagttgagcatcctgaaaaatttgagaagtttgggatgtccccatccaagggtgttttg
ttttatggaccacctggttgtggaaagactttgttagctaaggctattgctaatgagtgc
caggcaaactttatcagcatcaagggtcctgaattactgaccatgtggtttggggagagt
gaagcaaatgtacgggaaatctttgacaaagcacgccaatctgcaccatgcgttctcttt
tttgatgagctcgactccattgcaacacagagaggcagtagtgttggtgatgctggaggt
gctgctgatagggtactcaaccagctactaactgaaatggatggcatgaatgccaagaag
actgtcttcattataggggcaactaacagacctgatataatagatcctgcactgcttaga
ccaggtcgtttggaccaattgatttatattcctttgccagatgaggcctcaagataccaa
atatttaaggcttgtctgaggaaatctcctgtctcaaaagatgttgacctagcggttctt
gccaagtacactcagggatttagtggtgctgatatcacagaaatttgccaacgtgcatgc
aagtatgctattagagagaacatcgaaaaggacattgaaagagagaggaaacagagtgag
aatcctgaagcaatggaagaagatgagagtgaagtagccgagatcaaagcggttcatttt
gaggaatcaatgaagtttgctcgtcgcagtgttagtgacgcagacattcgcaagtaccaa
gcttttgctcagactttgcagcaatcaaggggatttggctctgagttccgtttctcagag
cgatctgaagctgcagttggaaacgctccaacagaccctttcacagctaatgcagctgat
gacgatgatctatatagttag
DBGET
integrated database retrieval system
