Zingiber officinale (ginger): 121981341
Help
Entry
121981341 CDS
T08725
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121981341
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121981341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
Cir_Bir_Yir
Motif
Other DBs
NCBI-GeneID:
121981341
NCBI-ProteinID:
XP_042389736
LinkDB
All DBs
Position
5A:complement(106653220..106666073)
Genome browser
AA seq
808 aa
AA seq
DB search
MENSQPLLYQASTTTDTSTNVSSEHILTNLDTALGVENSDPVSAMPLTNISITDGGGSYE
NNPSLTPENVPVDSVADVHTESTTNKENKADASTHAVGYDSVNGNINEMVNYQAVGAIEN
GVMSGDTGGAAIEHVYGDVVYSAEEERLWNLVQVNCLDFNAWTSLIDETEKVAENDIIKI
RKVYDAFLAEFPLCYGYWKKYADHEGRLDSINKVVEVYERAVLAVTYSVEIWLHYCTFAI
STYEDPDIIRRLFERGLAYVGTDYLSYQLWDEYIRYEESHQAWSNLAMIYTRILENPIQQ
LDRYFNCFKELASIHPLSEIRMAEEAAIVISTLDSSLESLHGEVHDDVVEQSSKPVSAGL
TEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLDDIELENWHHYLDFIE
RGDDFNKVVKLYERCLIACANYPELWIRYVLCMEASGSMELAYNALARATQVFVKKQPEI
HLFAARFKELSADIDGARTTYQFLYSEVSPGLLEPIVKHANMEYRLGEKEAAFSIYERAI
NAEQEKEHSQLLPLLLIQYSRFLYLVVGDAEKAREVLSGHLENMQLSRLVLEAVIHLESI
QSLPKRVDYLDSMVEKFIMPNPGNANLASAIDREEISCIFLEFLDLFGDAQSIKKASNRH
AILFLRQKGMVVSKKRHAEDFLASDNAKMAKNFHEPGQSALGAYTNVQSQWPAGYGQTAP
AWPTATQSQTQWNPGYSSHAGYAAYGSYANSGQPQVATSAPQSAAYGAYPPTYQAHPQLG
YAQPSSAAVAPGFPPQPVAAPQPYYGSY
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagtcaacccttactgtatcaagcatctactaccacagatacttcaaccaat
gtttcatctgaacacattttaacaaacttggacactgcgcttggtgttgaaaactctgat
cctgtttctgcaatgccattgaccaatatttctattactgatggtggtggctcctatgaa
aacaatccaagtttgacgccagaaaatgttccagttgattctgtagctgatgtgcatact
gaaagcactaccaacaaagaaaataaggcagatgcctcaacacatgcagttggttatgat
tcagttaatggaaacatcaatgaaatggtaaattatcaagctgttggagccattgagaat
ggggttatgtcaggtgatactggtggagctgccattgagcacgtgtatggagatgtggtg
tattcagctgaggaggaaaggttatggaatttggttcaggtgaattgtttagatttcaat
gcgtggacatcacttattgatgaaacagaaaaagttgctgagaatgacattatcaaaatt
cgaaaagtttatgatgcattcttggctgaatttcccttatgttatggatactggaagaaa
tatgctgatcatgaggggcgtttggacagtatcaacaaagtggtggaggtgtatgaacga
gctgttctagcagtaacctactctgttgaaatttggctgcattactgtacttttgcaatt
tcaacatatgaagatcctgatattatccgaaggttgtttgaacgtggactggcatatgtt
ggcactgattatctgtcataccagttgtgggatgagtacattagatatgaggagtctcat
caggcatggagtaatctggccatgatttataccagaattttggagaatccaattcaacaa
ctagatcgctattttaactgctttaaagagctggcatccattcatcctctgtccgaaata
cgtatggctgaggaagctgctattgtgatttccactttggattctagcttggaatctctt
catggcgaagttcatgacgatgtagtagaacaatcttctaaacccgtaagtgcaggttta
acagaagctgaggagttggagaagtatattgctattagggaagagatgtataagaaagct
aaagagttcgattctaagatcattggttttgaaacagctatcagaaggccatacttccat
gtcaggcctcttgatgatatagagcttgaaaattggcaccattatcttgattttatcgag
agaggagatgatttcaacaaggttgttaagttgtacgaaagatgtttaattgcttgtgcc
aattatccggagctttggatccgctatgttctatgcatggaagcaagtggaagcatggaa
cttgcctataatgctcttgctagggcaactcaagtctttgttaagaaacaacctgagatt
catctattcgctgctagattcaaggaactaagtgctgatattgacggagctcgcacaaca
tatcagtttctttactctgaagtttctcctggtttgttggaacctattgtgaaacatgca
aatatggaatatcgattgggtgagaaagaggcagctttctctatttatgagagagctata
aatgctgaacaggagaaagagcattctcagctgctaccattgttgcttattcaatactca
cgctttctttatttggttgttggtgatgcagagaaggcaagggaggttctatctggacat
cttgaaaatatgcaactatcacgattagttcttgaggctgtcatccacctagagtcaata
cagtcattgccaaagcgtgttgattacttggattcaatggtggagaaatttattatgcca
aatcctggtaatgctaatctcgctagtgccattgaccgagaagagatatcatgcatcttt
ttagagtttttggatctctttggagatgcacagtcaattaaaaaagcctccaaccggcat
gctattctttttttacgtcaaaagggcatggtggtatcaaaaaaaaggcatgctgaagat
ttccttgcgtcggacaatgctaagatggcaaagaactttcatgaaccaggtcagtcagca
ttgggggcctatacaaatgttcaaagtcagtggccagctggctatggacaaacagctcct
gcttggccaacagccacccagtcacagacccagtggaatcctggatattcgtcacatgct
ggatatgctgcatatggaagttatgcaaattctggccagccacaagttgctacatcagct
cctcagagtgctgcttatggtgcttatccacctacgtaccaggctcatcctcaactgggt
tatgcgcagccatcgtcagcagcagtagcaccgggttttcctcctcagccagtagcagcc
ccacagccatattatggcagctattga
DBGET
integrated database retrieval system
