Zingiber officinale (ginger): 121981477
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Entry
121981477 CDS
T08725
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121981477
09123 Folding, sorting and degradation
03018 RNA degradation
121981477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121981477
03041 Spliceosome [BR:
zof03041
]
121981477
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121981477
mRNA cycle factors
Stress granule specific factors
121981477
Spliceosome [BR:
zof03041
]
Complex C
Other components
Complex C specific factors
121981477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_Nup35
RRM_RdRP1_2
RRM_YTH1
RRM_PARP14_3
DUF5062
BRAP2
Motif
Other DBs
NCBI-GeneID:
121981477
NCBI-ProteinID:
XP_042389951
LinkDB
All DBs
Position
1B:complement(137520919..137532559)
Genome browser
AA seq
652 aa
AA seq
DB search
MAQATMQQQQQPPNGTVSTGGAGGGNQFPTTSLYVGDLQANVSDAQVFDMFSQIGPVVSV
RVCRDVDTRRSLGYAYVNYSNPADATTAMNVLNFALLNNKPIRIMYSNRDPSIRRSGAAN
IFIKNLDKTINNKALHEIFSTFGNILSCKVATDASGQSKGYGFVQFDQEESAQTAISKLN
GMLVNDKLVFVGPFLRKHERENLLDKTKFSNVYVKNLSESTTKEDLETIFGKYGKITSAV
VMTDGEEKSRCFGFVNFEDSDAAAQAVQELNGQKFDEKEWYVGKALKKYEREIELKEKFD
QSAKETVDKYQGLNLYLKNLDDSIGDDKLRDLFSGFGAITSCKVMREPNGASKGSGFVAF
STPEEASHALADMNGKMVCGKPLYVALAQRKEDRRARLQAQFSQVRPVAMTPTVGQRVPM
YPPGAPGLGQQIFYGQAPPALMPPQPGFGFQQQLIPGMRPAGAHMPNFFVPLVQHGQQVH
RPGSRRTGAGPVQQTQQPIPLMQQQMLPRGRVQRYPTGRNMPDVPMPGVVGGMLSPYDMG
GLPMRDVGMSQPAPIGTLASALANAAPEHQRMMLGENLYPLVESIEHDHAAKVTGMLLEM
DQTEVLHLLESPDALRAKVAEAMEVLRSVTQQQGNAPADQLAALSLNDGILS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggctacgatgcagcagcaacagcaaccgccaaatgggactgtcagtaccggc
ggcgccggcggggggaatcagttcccgacgacttctctgtacgtgggggacctacaggcg
aacgtgtcggacgcgcaggtgttcgatatgttcagccagatcggtcctgtggtgtcagtt
cgggtgtgccgcgatgtggatactcgccgatcgcttggctatgcttatgttaactacagc
aaccctgctgatgctacaacggcgatgaacgtgctgaactttgcccttcttaacaataag
cctattcgcattatgtattcgaatcgtgaccctagcatccgccgaagtggggcagcaaat
atattcataaaaaatctagataaaacaataaacaacaaagcactacatgaaatcttttcg
acattcggaaatattctttcatgcaaggttgctacagatgcatctggtcagtcaaaagga
tatggttttgttcaatttgatcaagaagaatcagcacagactgcaattagtaagttaaat
ggcatgttagttaatgataaactagtttttgttggaccattcctccggaagcatgaaagg
gaaaaccttttagataagacaaaattttctaatgtctatgtcaaaaacctctctgagtca
actacaaaggaagatctcgaaactatctttggcaagtatgggaaaattactagtgctgtt
gttatgacggatggggaggaaaaatcaaggtgctttggctttgtaaattttgaggattca
gatgctgctgctcaagcggttcaagaactcaatggacagaaatttgatgaaaaagagtgg
tatgttggaaaggcacttaagaaatatgaaagggaaatagaactaaaggaaaaatttgac
cagagtgcaaaagaaacagtagacaaataccaagggctcaacttatatctaaagaatttg
gatgatagtattggagatgataagctgagagatttgttttctggttttggtgcaattact
tcttgcaaggttatgcgggaaccaaatggtgcaagtaaaggttctggatttgtggctttc
tcaactccagaagaagcatctcatgcacttgcagatatgaatggaaagatggtttgcggg
aagccactctatgttgcacttgcacagcgtaaagaagacagaagagctaggctgcaggca
cagttttcacaagtacgacctgtagcaatgactcctactgttggtcagcgtgtccccatg
taccctcctggtgctcctggtcttgggcagcaaatattttacggtcaagcacctcctgcc
cttatgccaccacagcctggatttggtttccagcaacaacttatacctggaatgcggcct
gcaggagcacatatgcccaatttctttgtgccccttgtccaacatggtcagcaggtgcac
cgtcctggtagcagacgtactggagcaggacccgtgcaacaaactcagcagccaataccc
ttaatgcagcaacagatgcttccgaggggacgagttcaacgttatccaacaggtcgcaac
atgcctgatgttcctatgcctggtgttgttggtggcatgctctcaccttatgacatgggt
ggtttgcctatgcgagatgttggcatgtcgcaacctgctcccattggaacattggcttct
gctcttgcaaatgctgctcctgagcatcaaaggatgatgctcggcgagaacttgtatcca
cttgtggagagcattgaacatgatcacgcagccaaagttaccggtatgctactggagatg
gaccaaactgaggtgctgcacctgctggaatctccagatgctctgagggctaaagtcgca
gaggcaatggaagttctgaggagcgtcacacagcagcagggcaatgcgccagccgatcag
ctggctgcactatcgctcaacgatggtatcctctcatga
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