Zingiber officinale (ginger): 121981710
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Entry
121981710 CDS
T08725
Name
(RefSeq) uncharacterized protein LOC121981710
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121981710
09122 Translation
03013 Nucleocytoplasmic transport
121981710
03015 mRNA surveillance pathway
121981710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121981710
03041 Spliceosome [BR:
zof03041
]
121981710
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121981710
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
121981710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
Motif
Other DBs
NCBI-GeneID:
121981710
NCBI-ProteinID:
XP_042390312
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All DBs
Position
5A:complement(128467207..128474282)
Genome browser
AA seq
692 aa
AA seq
DB search
MSSPYPVLNNKSIDQWKVTELKEELKKRKLPVRGLKDELVRRLADAMDAEVVENKKKVDD
EVKEDEPKVAENFEVESATMVGKIKHPNEQDDFSSASMVDKVKDPDEQDDFTNTTMAVKD
SDITGIVKIGISDDHSDAGKTEHDGATKATSEVTNIDINQDLKMEDAGAVSSGLDASILE
TEAHVEALEDDATESHTVTLHYDLDAVVTNSEEKLDELMQDDSNLPLEEIKAGPESNNQV
SVVSLDLGSQVKCESLPIDSVSIIEKNKLKDNLNAADFYLEQEVVKQEMVQPSSSIVPSL
GGDLQTVHDAKEKVNHLVSVEDTNVKKNTFVDEGKKEDNLDEESPEKLNLDRSSSDELME
DDVLESKNIDSNIQSEELVEKIEVIQELAVSDTRNIDVKQDGLILEVTINEDIKKPALLS
EKRKLEDQEAAASNEVPKRQRRWSSDTVKIPERQSSNLSTSSAPKNTFEITSRRTFNKPD
LKDAGGSQKERIVPPSQKPATTSLRIDRFVRPFTLKAVQELLAKTGTVSSFWMDHIKTHC
YVTYSSVEEATSTRSAVYNLQWPPNGGNLLVAEFVDPQEVKAQTEAPPQAPASNPNTPKA
TNFQQPQAAQPPAHQHALKQHQPLPPITRQPDPQPVRERLPPPPPPREPDPPALTLDDLF
KKTKAAPRIYYLPLTKEEVASRLAARGKNTKN
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgccatatcctgtgctcaacaacaaatccattgaccaatggaaggttactgaa
ttgaaagaagagttaaagaaaagaaaactaccagtaagaggtttgaaggatgaattggta
cggaggttagctgatgcaatggatgccgaggttgtggagaacaaaaagaaagttgatgat
gaagtcaaagaagatgagcctaaggtggcagaaaattttgaagtagaaagtgctactatg
gttggcaaaattaaacatccaaatgagcaagatgacttctccagtgcttctatggttgac
aaagttaaagatccagatgagcaggatgacttcaccaataccactatggctgtcaaagat
tctgatatcactggcattgtgaaaattggcatatctgatgatcattcggatgctggaaaa
actgaacatgatggtgcaacaaaagctacttcagaagtgaccaatatagacatcaaccaa
gatttgaaaatggaagatgctggggcagtttcttcaggattggatgcatccattttagaa
acagaagctcatgtggaagccttggaagatgatgcaactgagagccacactgtgaccttg
cattacgatttagatgcagttgtaacaaattctgaagaaaagctcgatgaactgatgcag
gacgattcaaacctcccccttgaggaaatcaaagccggccctgaatcaaacaaccaggta
tctgtggtcagcctagacttaggatcccaggttaagtgtgagtcccttcctattgattct
gtgtcaattattgaaaagaataaattaaaggataatttaaatgctgctgacttttattta
gaacaagaggttgttaagcaggagatggttcagccatcatccagcattgttccttcacta
ggtggcgatctgcagactgtgcatgatgctaaagagaaagttaatcacctggtctccgtg
gaagatacaaatgttaaaaaaaatacatttgttgatgaaggcaagaaagaagataacctt
gatgaagagtctccagaaaaactgaacttagataggagttcgagtgatgaattgatggag
gatgatgtattggaaagtaaaaacattgattccaatatccaatctgaggaattagttgaa
aaaattgaggtgatacaagagcttgctgttagtgatacgagaaacattgacgttaagcag
gatgggttaattctggaggtaactattaatgaagacatcaagaagccagcactccttagt
gaaaagagaaaattagaagaccaagaagctgctgcaagcaatgaggttccgaaacggcag
cggcgttggagttcagacactgttaaaattccagaacgtcaatcatctaacctcagtaca
tcaagtgcacctaagaatacatttgaaattacttctagacgcacattcaataaacctgat
ttaaaggatgctggaggttctcagaaggaacggattgttccaccatcacagaaacctgca
accacttcactacgaattgacagatttgtgcgccctttcactctgaaagctgtgcaagag
ctgcttgcaaaaactggaacagtttccagtttctggatggaccacattaagacccactgc
tatgttacttattcttcagtggaggaagccacttcaactcgcagtgctgtttacaatctg
cagtggcctcccaatggtggaaatcttttggttgcggagtttgttgatccccaagaagtc
aaggcacaaactgaggcaccgccacaggccccagcttcaaacccaaacacacccaaggct
acaaactttcagcaacctcaggctgctcaacctccagctcatcagcatgctctgaaacaa
caccaacctttgcctcccatcacaagacaacctgatccacagcctgtaagagagcgactc
cccccacctccacctccaagggagcccgacccacctgctctgacactcgatgatctgttt
aagaagacaaaggctgccccaagaatctattatctgcccttgactaaagaagaggtggca
tcaaggcttgcagcacgtggtaaaaacaccaagaactag
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