Zingiber officinale (ginger): 121981822
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Entry
121981822 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta-like
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121981822
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
121981822
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121981822
03036 Chromosome and associated proteins [BR:
zof03036
]
121981822
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
121981822
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
121981822
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
121981822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
EF-hand_8
P2R3B_EF-hand
DUF4187
Motif
Other DBs
NCBI-GeneID:
121981822
NCBI-ProteinID:
XP_042390503
LinkDB
All DBs
Position
5A:131103541..131136980
Genome browser
AA seq
541 aa
AA seq
DB search
MDIDIVRDMASLDPELLQLPEVSQVVLKEKPRIAEELFSQWLSLHETGKLVKSLIEDAKG
SSPLNVPGSSCNTNSVGNNSPPSMFPAGSVPPLSPRSTCGSPRFLKRNSNVGLSPFGSPL
KLISEPIKEVIPQFYFHNGRPPPKALKEQCLSRIDHLFFGNMDGLQLQEFKTVTKEICKL
PSFLSTSFFRKCDAECTGMVSRDAFIEYWISSNLMTKDVATQIFTILKQADRSYLIQDDF
KPVLRELLATHPGLEFLQGTPEFQDRYAETVIYRIFYYMNRSGNGQLTLRELKRGNLIAA
MQHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFFIDKENLIKYGNHALTYRIVER
IFSQIPRKFKSKVDGKMGYEDFVNFILAEEDKSSEPSLEYWFKCIDLDGNGIITSTEMQF
FYEEQLHRMECMAQEAVLFEDILCQMIDMIGPENESYFTLLDLKGSKLSGNIFNILFNLN
KFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDCEDVSNGSGDIWDESLEAP
F
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgatattgtgagggatatggcgtcgcttgacccggagctgctgcagctcccg
gaggtatctcaagtggttctgaaggaaaaacctaggatagccgaggaactgttctcccag
tggctttcattgcacgaaacagggaaattggtgaagtcattgattgaagatgcaaaaggg
agttcacctctcaatgttccaggcagttcatgtaatacaaattctgttgggaataattcc
ccgccttccatgtttcctgctggcagtgtgcctcctctctcacctaggagcacatgtgga
tctccccgttttttgaagcgtaactcaaatgttggactttcaccttttggttctccacta
aaattaattagtgaacccatcaaagaagttatacctcagttttacttccataatggccgt
ccgcctccaaaagcattgaaagaacaatgcttatctagaattgatcatcttttctttggt
aacatggatgggctacaattacaagaattcaaaactgtgacgaaggaaatctgtaagcta
ccatcattcctctccacttctttctttagaaagtgcgatgctgaatgtaccggaatggtg
tcaagggatgcatttattgaatactggatcagtagcaacttgatgacaaaagatgtagct
actcagatcttcaccattctgaagcaagcagaccgcagttaccttattcaggatgatttc
aaacctgtgttgagagaacttttggcaacccatccaggtttggaattcctacaggggact
cctgagtttcaggatagatatgctgaaactgttatatacagaattttctactatatgaat
agatctggcaatggtcaacttaccctaagagaattgaaacggggaaatttaattgctgca
atgcagcatgctgatgaagaggaggatattaataaagtcctgaggtacttttcatatgag
cacttttatgtgatttactgcaaattttgggagcttgatacagatcatgatttctttatt
gacaaagaaaaccttatcaaatatggaaatcatgcactgacctacagaattgttgaaagg
attttttcacagattcccaggaaattcaaaagtaaagttgatggcaaaatgggctatgaa
gattttgtgaattttatactagcagaggaggataagtcatccgagcctagccttgagtat
tggttcaagtgtatagacttggatggtaatggaattataacctcaaccgagatgcaattt
ttctatgaggagcagctgcatcgaatggaatgtatggcacaagaagctgtactgtttgag
gacattctgtgccagatgattgatatgattggacctgagaatgagagctactttacactg
ctagacttgaaaggcagcaaactttcgggaaatatttttaatatccttttcaatctgaat
aaatttatggcatttgaaactcgtgatccatttctaattcggcaggaacgtgaaaatcca
actttgacagagtgggatcgttttgcacatagagaatatatcagattgtccatggaagaa
gactgtgaagatgtctccaatggaagtggtgacatctgggatgaatcacttgaggctcct
ttttaa
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