Zingiber officinale (ginger): 121981892
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Entry
121981892 CDS
T08725
Name
(RefSeq) COP9 signalosome complex subunit 5-like
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121981892
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zof01002
]
121981892
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121981892
03036 Chromosome and associated proteins [BR:
zof03036
]
121981892
03400 DNA repair and recombination proteins [BR:
zof03400
]
121981892
Peptidases and inhibitors [BR:
zof01002
]
Metallo peptidases
Family M67
121981892
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121981892
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
121981892
BRISC complex
121981892
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
121981892
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121981892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
121981892
NCBI-ProteinID:
XP_042390598
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All DBs
Position
5A:complement(132676543..132697000)
Genome browser
AA seq
462 aa
AA seq
DB search
MLLNFSSSFVCGNPSSERVNGDGFRHCKIRRAMSLGSVKMAEEVWLTCLTHALTTETEEI
MGLLLGDIQYSDGGHATALIWGASPQMRSDRRKDRVETNPELLAAASAQAERMTLVTGKT
TRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDNGFLGLIFSCYSEDSLKVGRIQVIAFQS
MDGKQRQVPLNTNSSIIEVETSWTSSENSMSPFNSSLIKNTEQDTGDSRASKSTRVGGRS
PELGELFSYADVDYSAKQKARESSLTVYNEGNVTNAGASLDSSDMTPSMQEALHRSNMDM
SGAEYVRKEVPLQVLPARYLWSLDSPLSSFTDMQHVLFEEERSAYKQAILQNMRDGRIHP
LNYIHHTSTYQASLCKLMEYCLNPAISILQDRLKENEIKLATLMEEAKSLEPVAQSVKSG
VKSENPHHRGNRSSAAVPTTKESHDSAGPRSPSSIGSRRKVP
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcttttaaatttttcttcttctttcgtctgcggaaatccatcctcagagcgagtaaac
ggcgacggattccgccattgcaagatccgccgggccatgtcgctagggtcggtgaagatg
gcggaggaggtgtggctcacttgtctcacccacgcactgaccaccgagaccgaggagatc
atgggcctcctcctcggtgatatccaatattcagatggtggtcatgcaactgcacttatc
tggggagcatcaccacagatgcgatctgaccgtcgtaaagaccgtgtggagactaatccg
gagttgcttgcagctgcttcagctcaagctgagagaatgactttggtaacaggaaaaaca
acaagggtcattggctggtaccattctcatcctcacattacagtccttccatctcatgta
gatgttagaactcaggcaatgtatcaacttctggacaatggtttccttggtttgatattt
tcttgttatagtgaagattccctgaaggtgggaagaattcaagtaattgctttccaatct
atggatggaaaacagagacaagttccattgaataccaacagctccatcatagaagtcgaa
acatcttggacttcctcggagaatagcatgtcaccattcaattccagtttaatcaagaac
actgaacaggatactggagattctagagcatccaaaagtactagggtcgggggaagatct
ccagagctaggggaactattttcttatgctgatgtagattattcggcaaagcaaaaggca
agagaaagctctctgactgtttacaatgaaggtaatgtaactaatgcaggtgccagctta
gattcttccgatatgactccaagcatgcaggaggcattgcatcgttcgaacatggatatg
agtggtgcagagtatgttaggaaggaagtaccacttcaagttttgccagctagatatctc
tggagtctcgactctcccttgtcatcatttacagacatgcagcatgtattatttgaggaa
gaacgatcagcatataagcaagccatacttcaaaacatgcgtgacgggagaatacacccc
ttgaattatattcatcacacttctacatatcaggcttcactttgtaaactgatggaatat
tgcttaaacccagcaatcagcattctgcaagaccgtctgaaggaaaatgaaatcaagcta
gctacgctaatggaggaggcgaaatctctggagccagtcgcacaaagtgtgaaaagtggc
gttaagtctgagaatcctcaccatcgtggaaatcgtagcagtgccgccgttccaacgact
aaggagtcacatgattctgctggtccgaggagccccagcagcattggcagcaggagaaag
gttccatga
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