Zingiber officinale (ginger): 121981966
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Entry
121981966 CDS
T08725
Name
(RefSeq) ISWI chromatin-remodeling complex ATPase CHR11-like
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121981966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121981966
03036 Chromosome and associated proteins [BR:
zof03036
]
121981966
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
121981966
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
121981966
RSF complex
121981966
WICH complex
121981966
B-WICH complex
121981966
NORC complex
121981966
BRF complex
121981966
NuRF complex (fruit fly)
121981966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
HDA2-3
DEAD
Myb_DNA-binding
DBINO
CHDII_SANT-like
Ribosomal_L27A
AAA_14
SSXT
ToxN_toxin
Motif
Other DBs
NCBI-GeneID:
121981966
NCBI-ProteinID:
XP_042390716
LinkDB
All DBs
Position
5A:complement(135434929..135447354)
Genome browser
AA seq
1072 aa
AA seq
DB search
MAKPYDSGTSSEGTASNVSIASEDEGRNGEEANLDEEIDEEELEAVARTASPDEDEAKDD
SGAEDAKDDDGDEYGEEEKFEIGKRERERLREMQRIKKQKIQEILDEQNANINAVMNNKG
QGRLKYLLQQTEIFAHFAKGAQSTSEKKPRGRGRHASKITEEEEDEEYLKEEEDALAGAG
GTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEF
RGITGPHMVVAPKSTLGNWMREIRRFCPILHPIKFLGDPEERKHIRENLLVAGKFDVCVT
SFEMAIKEKNALRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLH
ELWALLNFLLPEIFSSSETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP
PKKETILKVGMSQMQKHYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAE
PGPPYTTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLLYRGYQYC
RIDGNTGGDERDASIEAFNQPGSQKFIFLLSTRAGGLGINLATADVVILYDSDWNPQVDL
QAQDRAHRIGQKKEVQVFRFCTEYAIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDE
LLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEMTAELDVKMKKFTEDAIKFKMDDTAD
LYDFGDEKDDNKVDFKKIVADNWVEPPRRERKRNYSDADYFKQTMRQGASAKSKEPRIPR
MPQLHDFQFFNTQRLSELYEKEVRYLMQSHQKNQLKDTIGEEEEAEDLEDPLTAGEQAEK
EQLLEEGFSTWTRKDFNTFTRACEKYGRNDIRNIASEVEGKTEEEVERYVTVFRQRYKEL
NDYDRIIKNIERGEARISRKEEIMRAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRF
MLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDE
RERQARKDKKHSRTPTKRLSKGQANETPALTSFKKRKQSSMDDYMGSGRRRR
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccctacgattcggggacttcctcggagggaaccgcctcgaacgtctcgatc
gcctcggaggatgagggcaggaatggagaggaggccaatctcgacgaggagatcgacgag
gaagaactcgaggctgtcgccagaaccgctagccccgacgaagatgaggctaaggatgac
agcggcgctgaagacgccaaggacgacgatggcgatgagtatggcgaggaagaaaaattt
gaaattgggaagcgcgaaagagaaagattaagagagatgcagcggataaaaaaacagaag
attcaagagatacttgatgaacagaatgctaatattaatgctgtcatgaacaacaaggga
caagggcgtttgaagtacttgctgcaacagactgagatttttgctcactttgcaaagggt
gctcaatctacatcagaaaagaagccaagaggaagggggcgccatgcatctaaaataact
gaggaagaagaagatgaagaatatcttaaggaggaagaagatgctcttgctggtgctgga
gggacccgtttggtcacacagccatcttgtatacagggaaaaatgagagattatcagtta
gctggattgaattggctaataagattgtatgagaatggaattaatgggattctagctgac
gaaatgggtcttggaaagacattgcaaactatctctctacttggctatttgcatgaattt
agaggaattactggtcctcacatggtggtagcaccaaaatctactctcggcaactggatg
agggaaattcgccgcttctgtccaattctgcaccctataaaatttcttggggatcctgaa
gaaagaaaacatattcgtgagaatctgttggtggctgggaagtttgatgtctgcgtaact
agttttgaaatggctatcaaagaaaagaatgctttaagacggtttagctggcgctatgtg
atcattgatgaagctcatcggataaagaatgaaaattctcttctttctaaaacaatgaga
ctctacaatactaattaccgccttcttatcactggaacaccacttcagaacaacctgcat
gagctttgggctcttcttaattttctgcttcctgagatatttagttcttctgaaactttt
gatgaatggttccaaatatctggggaaaacgatcagcaggaggttgtccaacagcttcat
aaggttcttcgcccgtttcttttgagaagacttaaatctgatgttgaaaaaggtttgcct
ccaaaaaaggaaactatactcaaggtaggaatgtcccagatgcaaaagcattattaccgt
gctctgcttcaaaaagacttggaggtcattaatgctggaggggagcgcaagcgtcttctg
aacattgctatgcaactgcgcaaatgctgcaatcatccatatctgttccaaggtgcagag
cctggaccaccttatacaactggagaacatcttatcacaaatgcaggaaaaatggttctg
ttagataagctgttgcctaaactaaaggagcgggactccagggttctaatattttcacag
atgactagactattggacatattggaagattatttgctataccgtgggtaccaatattgc
cggattgatgggaatactgggggagatgagcgggatgcatcaattgaagcctttaatcaa
cctggaagccaaaaatttattttcttgctttctacaagagctggtggactgggaattaat
ctagctactgcagacgttgtcattctctatgacagtgactggaatccacaagttgattta
caagcacaggatcgtgctcatagaattggccaaaagaaagaagttcaagtgttccgtttc
tgtaccgagtatgctattgaggagaaagtgatagaaagggcatacaaaaagcttgcactt
gatgccttagttattcaacaaggaagattagcagaacagaaaactgttaacaaagatgag
cttctacaaatggttagatttggtgctgaaatggtctttagctccaaggacagcacaatt
actgatgaggacattgatcgtatcatagctaaaggagaagagatgactgcagaacttgat
gtaaaaatgaaaaagtttacagaggatgccataaagtttaagatggatgacactgctgac
ttgtatgattttggcgatgagaaggacgataacaaggttgactttaaaaaaatagttgct
gataactgggttgaaccacccaggagggaaagaaaacgcaattattctgatgctgattat
ttcaagcaaacaatgcgacaaggtgcttctgcaaaatctaaagagccacggattcctcgt
atgcctcaattacatgattttcagtttttcaacactcagaggttaagtgagttgtatgag
aaagaagtacgatatctcatgcaatctcatcaaaaaaatcagctaaaagatactataggt
gaagaggaggaagctgaagatttggaagatccattgactgcaggggaacaagcagagaag
gagcaacttcttgaagaggggttttcaacgtggacacggaaagacttcaatactttcact
cgagcgtgtgagaagtatgggcgcaatgacattaggaatatagcgtcagaggtggagggg
aaaacagaagaagaggtagaaagatatgtcaccgtcttcagacagagatacaaagaatta
aatgactatgaccgtatcatcaagaacatagagaggggtgaggccagaatctcacgaaaa
gaagagataatgagagcaatcggcaagaagttggaccgctataagaacccatggttggaa
ctaaagattcaatatggtcagaataaaggaaaattgtataatgaagaatgtgatcgtttc
atgttgtgcatggtgcacaaacttggttatggcaactgggatgagctcaaggcagcattt
cgcacctcacctttgtttcgatttgattggtttgtcaagtcccggacaactcaggaactt
gctagacgctgtgatacccttatccggctcgtggagaaagaaaaccaagaatacgacgag
agggaaagacaggcacggaaggacaaaaaacattctaggacaccaacaaagcggttatca
aagggacaggctaacgagactcctgccttgacttcctttaaaaagagaaaacaatcatcc
atggacgactacatgggttcggggaggcggcggcgatga
DBGET
integrated database retrieval system
