Zingiber officinale (ginger): 121982007
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Entry
121982007 CDS
T08725
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121982007
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121982007
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
121982007
NCBI-ProteinID:
XP_042390781
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All DBs
Position
5A:complement(136822721..136830044)
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AA seq
448 aa
AA seq
DB search
MTEPSKVIHVRNVGHEISENDLLQLVQPFGVVTKLVMLRAKNQALLQMHDVASAMNVIQY
YTNVQPSVRGRNVYIQFSSHQELTTADQNSQGRKGDQDSPPNRILLATIHHMLYPITVEV
LHQVFSPCGYVEKIVTFQKSAGFQALIQFDAQQSAVQARSSLQGRNIYDGCCQLDIQFSN
LNELQVNYNNDRSRDFTNPSLPTDQRGRSSQQHGYGDAGSLYALQSSGGRAAFGQMGNAA
AIAAAFGGGLPAGVTGTNDRSTILVTNLDPDKIDEDKLFNLFSMYGNIIRIKLLRNKPDH
ALVQMEDGFQAELAVHFLKGSLLFGKRLELNFSKYPSITPASDTHEYASSSLNRFNNNAV
KNYKYCCSPTKMIHLSSLPQDITEEEILSHLEEHGTVVNTKLFEVNGKKQALVLFEDEAQ
ATEALVCKHASSIARSVIRISFSQLQSI
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgacggagccctccaaagtcattcacgtccgtaatgttggccacgagatatctgaaaat
gatcttcttcagttggtgcagccttttggggttgtcaccaagcttgtaatgttacgagcc
aaaaatcaggcacttcttcagatgcatgatgtagcttctgcaatgaatgttattcagtac
tacacgaatgtccaaccaagtgtcaggggacgaaatgtatatatacaattttcttcacat
caagaacttacaacagcagatcaaaactctcaaggacgcaaaggcgatcaggattcaccc
cccaaccgaattctcttagctacaattcatcacatgctttatcccatcacagtagaagtg
ctgcatcaagttttttctccatgtggatacgtggagaaaattgtgacgttccagaagtca
gctggtttccaggcccttatccaatttgatgcacaacagagtgcagtgcaagcaagaagt
tctctacaaggacgcaatatatatgatggctgctgtcagctagatatacagttttccaat
ctcaatgagttgcaagtaaattacaacaatgacaggtccagagatttcacaaatccatct
ttgcccactgatcagagaggtagatcttcacaacagcatggttacggtgatgctggaagt
ctctatgctcttcaatcatctggcggcagagctgcatttggtcagatgggtaatgctgca
gcgattgcagctgcatttggcggaggattgcctgctggagttactggcactaacgacaga
tctacaatcttagtaactaatttagatcctgataaaattgacgaagataagcttttcaat
ttgttctcgatgtacggcaatatcataagaataaaactactacgcaacaagcccgaccat
gctcttgttcagatggaggatggtttccaggctgaattagctgtacattttttgaaggga
tcgttattgttcgggaagaggttggagttgaacttctccaagtatccgagcatcactccc
gcatctgacacccatgaatacgccagttcgagcctcaaccgcttcaacaataatgctgta
aaaaactacaaatattgttgttccccgacgaagatgatccatttgtcatcccttccgcaa
gacatcactgaggaggagatcctctcgcacctggaggaacatggcacggtggtgaacacc
aaactttttgaggtgaacgggaagaagcaggcgctagttctgtttgaggacgaggcgcag
gccactgaggccctcgtgtgtaagcatgcaagctcgatcgcacggtcagtcatccggatt
tccttctcgcaactccagagtatttag
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